RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 hCG_1818297A0A087WSY0 165 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 PDE2AO00408 941 aaPredicted RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 ENC1O14682 589 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 FZD6O60353 706 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 RECQL5O94762 991 aaPredicted RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 NME1P15531 152 aaKnown RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 ZNF30P17039 623 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 KELP23276 732 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 DGKAP23743 735 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 RWDD2BP57060 319 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 FZD2Q14332 565 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 ACOX1Q15067 660 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 CCDC181Q5TID7 509 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 KANSL1Q7Z3B3 1105 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 RNF10Q8N5U6 811 aaKnown RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 ARRDC2Q8TBH0 407 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 PIH1D2Q8WWB5 315 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 ADAMTS14Q8WXS8 1223 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 CNDP2Q96KP4 475 aaKnown RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 TBATAQ96M53 351 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 MCCC1Q96RQ3 725 aaPredicted RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 APOOQ9BUR5 198 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 DUSP23Q9BVJ7 150 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 TDRD1Q9BXT4 1180 aaKnown RBP13.43□□□□□ -0.26
CLK3-213ENST00000563842 TSGA10Q9BZW7 698 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 PCDH9Q9HC56 1237 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 SEPT10Q9P0V9 454 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 CSNK1G3Q9Y6M4 447 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 LRP4O75096 1905 aa13.43□□□□□ -0.26
CLK3-213ENST00000563842 A0A0J9YYE9 177 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 A8MX80 341 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 MIF4GDA9UHW6 222 aaKnown RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 HACD1B0YJ81 288 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 CACNB4O00305 520 aaPredicted RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 KRT86O43790 486 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SDC3O75056 442 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 ZNF189O75820 626 aaPredicted RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 HEXIM1O94992 359 aaKnown RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 TRBC1P01850 177 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 C1SP09871 688 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 JUNDP17535 347 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SEMG2Q02383 582 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 PPARDQ03181 441 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 ZBTB17Q13105 803 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 ZNF211Q13398 564 aaPredicted RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 INPP5AQ14642 412 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 NFATC4Q14934 902 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SLC14A2Q15849 920 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 CNGA3Q16281 694 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 TEX44Q53QW1 395 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 BBS12Q6ZW61 710 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 PEX26Q7Z412 305 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 NT5DC3Q86UY8 548 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 RAVER1Q8IY67 606 aaKnown RBP13.42□□□□□ -0.26
CLK3-213ENST00000563842 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLK3-213ENST00000563842 UBL4BQ8N7F7 174 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 OR4C6Q8NH72 309 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 LRRN4Q8WUT4 740 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 KRT35Q92764 455 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 NUS1Q96E22 293 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 VAT1Q99536 393 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 ADGRE3Q9BY15 652 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SLC13A1Q9BZW2 595 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SLC25A51Q9H1U9 297 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 NLGN3Q9NZ94 848 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 SPASTQ9UBP0 616 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 CHKBQ9Y259 395 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 PCDHGA1Q9Y5H4 931 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 FAM208BQ5VWN6 2430 aa13.42□□□□□ -0.26
CLK3-213ENST00000563842 ARHGEF17Q96PE2 2063 aaPredicted RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 MACROD2A1Z1Q3 448 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 GRID2IPA4D2P6 1211 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 APOC4-APOC2K7ER74 178 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 SCAMP1O15126 338 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 ARHGAP6O43182 974 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 APOC2P02655 101 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 PCCBP05166 539 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 PDHA1P08559 390 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 HOXC4P09017 264 aaPredicted RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 ATXN1LP0C7T5 689 aaKnown RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 TSHRP16473 764 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 CKMT2P17540 419 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 PTPN7P35236 360 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 CD86P42081 329 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 MARCKSL1P49006 195 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 NIPAL4Q0D2K0 466 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 EIF2B5Q13144 721 aaKnown RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 ILKQ13418 452 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 XRCC4Q13426 336 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 PRKD1Q15139 912 aaPredicted RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 ZNF542PQ5EBM4 170 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 FAXCQ5TGI0 409 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 CCDC70Q6NSX1 233 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 ESRP1Q6NXG1 681 aaKnown RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 RAB44Q7Z6P3 723 aaPredicted RBP13.41□□□□□ -0.26
CLK3-213ENST00000563842 SLCO6A1Q86UG4 719 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 SDR16C5Q8N3Y7 309 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 SLC25A45Q8N413 288 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 CNTD1Q8N815 330 aa13.41□□□□□ -0.26
CLK3-213ENST00000563842 LRRC57Q8N9N7 239 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms