RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 ANKRD66B4E2M5 251 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ENC1O14682 589 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 OPHN1O60890 802 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ALPIP09923 528 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ZNF883P0CG24 379 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 THEGLP0DJG4 465 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ZNF30P17039 623 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 GM2AP17900 193 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 HNF1BP35680 557 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 IGFALSP35858 605 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 CDK18Q07002 472 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 MPP3Q13368 585 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ARHGEF7Q14155 803 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 SIX1Q15475 284 aaPredicted RBP16.76■□□□□ 0.27
CLK3-207ENST00000562389 QPCTQ16769 361 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ANKRD20A2Q5SQ80 823 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ANKRD20A1Q5TYW2 823 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ANKRD20A3Q5VUR7 823 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 KDELC1Q6UW63 502 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 CBARPQ8N350 705 aaPredicted RBP16.76■□□□□ 0.27
CLK3-207ENST00000562389 OR13H1Q8NG92 308 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 OR2I1PQ8NGU4 316 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 MAIP1Q8WWC4 291 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 COQ10AQ96MF6 247 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 ERVMER34-1Q9H9K5 563 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 GDF3Q9NR23 364 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 KCTD5Q9NXV2 234 aa16.76■□□□□ 0.27
CLK3-207ENST00000562389 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.76■□□□□ 0.27
CLK3-207ENST00000562389 POM121BA6NF01 834 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 C5orf60A6NFR6 353 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 TOR1BO14657 336 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 LIASO43766 372 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 DFNA5O60443 496 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 RECQL5O94762 991 aaPredicted RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 RABIFP47224 123 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 PFN3P60673 137 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 LRRC14Q15048 493 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 PTPRRQ15256 657 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 IRF4Q15306 451 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 OASLQ15646 514 aaKnown RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 PCSK7Q16549 785 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 WSCD2Q2TBF2 565 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 CRTC1Q6UUV9 634 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 PTAR1Q7Z6K3 402 aaPredicted RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 TSPAN33Q86UF1 283 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 SPATS2Q86XZ4 545 aaKnown RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 DCP2Q8IU60 420 aaKnown RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 OXR1Q8N573 874 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 ATG4AQ8WYN0 398 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 RMDN1Q96DB5 314 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 IFT43Q96FT9 208 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 OXNAD1Q96HP4 312 aaPredicted RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 PBKQ96KB5 322 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 GORASP1Q9BQQ3 440 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 RTKNQ9BST9 563 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 MLPHQ9BV36 600 aaPredicted RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 IL21RQ9HBE5 538 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 MBNL1Q9NR56 388 aaKnown RBP16.75■□□□□ 0.27
CLK3-207ENST00000562389 DLL3Q9NYJ7 618 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 UBP1Q9NZI7 540 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 ZKSCAN5Q9Y2L8 839 aa16.75■□□□□ 0.27
CLK3-207ENST00000562389 LOC285095A0A1B0GVY8 99 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 CEP104O60308 925 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 PMPCBO75439 489 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 NDST3O95803 873 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 EPOP01588 193 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 FGGP02679 453 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 ATP1A1P05023 1023 aaKnown RBP16.74■□□□□ 0.27
CLK3-207ENST00000562389 CXCR5P32302 372 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 GEMP55040 296 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 WNT3AP56704 352 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 SLC14A1Q13336 389 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 GALNT3Q14435 633 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 ACOX1Q15067 660 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 LRRC66Q68CR7 880 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 Q6ZSR6 202 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 RAVER1Q8IY67 606 aaKnown RBP16.74■□□□□ 0.27
CLK3-207ENST00000562389 SLC22A18ASQ8N1D0 253 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 RASGEF1CQ8N431 466 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 FAM71DQ8N9W8 422 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 CCDC110Q8TBZ0 833 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 RTP4Q96DX8 246 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 DTD2Q96FN9 168 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 MRGPRX2Q96LB1 330 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 PPP1R2P1Q96PQ5 205 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 SMIM14Q96QK8 99 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 ELF4Q99607 663 aaPredicted RBP16.74■□□□□ 0.27
CLK3-207ENST00000562389 TMEM121Q9BTD3 319 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 KCND1Q9NSA2 647 aa16.74■□□□□ 0.27
CLK3-207ENST00000562389 FNDC3AQ9Y2H6 1198 aaKnown RBP16.74■□□□□ 0.27
CLK3-207ENST00000562389 ASCC3Q8N3C0 2202 aaKnown RBP16.74■□□□□ 0.27
CLK3-207ENST00000562389 A0A1B0GTQ1 180 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 F5H423 210 aaPredicted RBP16.73■□□□□ 0.27
CLK3-207ENST00000562389 TM4SF5O14894 197 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 YKT6O15498 198 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 GCATO75600 419 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 ANXA9O76027 345 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 PSMB4P28070 264 aa16.73■□□□□ 0.27
CLK3-207ENST00000562389 STIP1P31948 543 aaKnown RBP16.73■□□□□ 0.27
CLK3-207ENST00000562389 CCT8P50990 548 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms