RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ELAVL3Q14576 367 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 EFTUD2Q15029 972 aaKnown RBP eCLIP10.33□□□□□ -0.761e-7■■■□□ 15.5
USP3-219ENST00000561326 TNFAIP8L3Q5GJ75 292 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 C9orf64Q5T6V5 341 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 FAM46CQ5VWP2 391 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 MRNIPQ6NTE8 343 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 KIAA0408Q6ZU52 694 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 TPRG1Q6ZUI0 275 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 TRMT11Q7Z4G4 463 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 STRA8Q7Z7C7 330 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 TTC7BQ86TV6 843 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CHPFQ8IZ52 775 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 UNC5BQ8IZJ1 945 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 OTUD6BQ8N6M0 293 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 ZNF513Q8N8E2 541 aaPredicted RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 CHST14Q8NCH0 376 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 OR4K2Q8NGD2 314 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 OR4L1Q8NH43 312 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GRIN3AQ8TCU5 1115 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 ALKBH8Q96BT7 664 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 TLCD1Q96CP7 247 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 SCRN2Q96FV2 425 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CDKN2AIPNLQ96HQ2 116 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 PPP1R16AQ96I34 528 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GUCD1Q96NT3 240 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 LYSMD1Q96S90 227 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 SMC6Q96SB8 1091 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 ZFYVE1Q9HBF4 777 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 IARS2Q9NSE4 1012 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 ZNF711Q9Y462 761 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 SPO11Q9Y5K1 396 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 ACTL7BQ9Y614 415 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 ARL5AQ9Y689 179 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 PIAS3Q9Y6X2 628 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 SCN8AQ9UQD0 1980 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 C1orf232A0A0U1RR37 186 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 CAPN8A6NHC0 703 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 A6NNZ2 444 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 C1QTNF3-AMACRE9PGA6 284 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 KPNA3O00505 521 aaPredicted RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 CD3EAPO15446 510 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 SYNCRIPO60506 623 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 SIN3BO75182 1162 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 PIAS1O75925 651 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 NR1D1P20393 614 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 PSMA3P25788 255 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 HPDP32754 393 aaPredicted RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 HNF1BP35680 557 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 PPARGP37231 505 aaPredicted RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 ARCN1P48444 511 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 POLD2P49005 469 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 PPP2R2AP63151 447 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TMPRSS15P98073 1019 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 CCDC15Q0P6D6 951 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 MESP2Q0VG99 397 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TDGQ13569 410 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 ARHGEF7Q14155 803 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TUBB8Q3ZCM7 444 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 FASTKD1Q53R41 847 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 HABP4Q5JVS0 413 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 ZDHHC20Q5W0Z9 365 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 PACS1Q6VY07 963 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 EXOC3L1Q86VI1 746 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 CNTN4Q8IWV2 1026 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 SRRM1Q8IYB3 904 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 CYP4X1Q8N118 509 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 STK40Q8N2I9 435 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 MDGA1Q8NFP4 955 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 OR13J1Q8NGT2 312 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 SCG3Q8WXD2 468 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.32□□□□□ -0.76
USP3-219ENST00000561326 SGSM3Q96HU1 749 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TBATAQ96M53 351 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TCF12Q99081 682 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TTC1Q99614 292 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 MFSD1Q9H3U5 465 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 CNOT10Q9H9A5 744 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 DYRK4Q9NR20 520 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 SMYD2Q9NRG4 433 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 RAD18Q9NS91 495 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 EURLQ9NYK6 297 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 CTNNAL1Q9UBT7 734 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 SLC2A6Q9UGQ3 507 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 VPS9D1Q9Y2B5 631 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 KCTD3Q9Y597 815 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 STON1Q9Y6Q2 735 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 WASF2Q9Y6W5 498 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 LRRK1Q38SD2 2015 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 TRPM6Q9BX84 2022 aa10.32□□□□□ -0.76
USP3-219ENST00000561326 ZNF106Q9H2Y7 1883 aaKnown RBP10.32□□□□□ -0.76
USP3-219ENST00000561326 MUC22E2RYF6 1773 aaPredicted RBP10.31□□□□□ -0.76
USP3-219ENST00000561326 COL4A3Q01955 1670 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 TSPAN11A1L157 253 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 UPK3BL1B0FP48 263 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 TRIM49D1C9J1S8 452 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 UPK3BL2E5RIL1 263 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 K7EQS6 105 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 MAN2B1O00754 1011 aa10.31□□□□□ -0.76
USP3-219ENST00000561326 BUD23O43709 281 aaKnown RBP10.31□□□□□ -0.76
USP3-219ENST00000561326 SLC34A2O95436 690 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms