RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	GPATCH11	Q8N954	259 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TMEM161B	Q8NDZ6	487 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	FBXL13	Q8NEE6	735 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RDM1	Q8NG50	284 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZNF398	Q8TD17	642 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PARD3B	Q8TEW8	1205 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SH3TC2	Q8TF17	1288 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TCP11	Q8WWU5	503 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ATG4A	Q8WYN0	398 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MAML1	Q92585	1016 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	INPP5D	Q92835	1189 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SEMA4D	Q92854	862 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KLHL29	Q96CT2	875 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RSRC1	Q96IZ7	334 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	THOC3	Q96J01	351 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	VCPIP1	Q96JH7	1222 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TTC25	Q96NG3	672 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SCLT1	Q96NL6	688 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	NT5C1B	Q96P26	610 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TMEM237	Q96Q45	408 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TGS1	Q96RS0	853 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	ELAC2	Q9BQ52	826 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	SENP7	Q9BQF6	1050 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MXRA8	Q9BRK3	442 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZNF577	Q9BSK1	485 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	HIPK2	Q9H2X6	1198 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ECT2	Q9H8V3	914 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	C17orf75	Q9HAS0	396 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RNPEPL1	Q9HAU8	725 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	UBE2T	Q9NPD8	197 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	ANKEF1	Q9NU02	776 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SEPT11	Q9NVA2	429 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	SLC5A4	Q9NY91	659 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MAP3K20	Q9NYL2	800 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	ADAM22	Q9P0K1	906 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SENP1	Q9P0U3	644 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	COL20A1	Q9P218	1284 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ASIC3	Q9UHC3	531 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	BAIAP2L1	Q9UHR4	511 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ANAPC7	Q9UJX3	599 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	EDAR	Q9UNE0	448 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	EXOC7	Q9UPT5	735 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ICK	Q9UPZ9	632 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SHOC2	Q9UQ13	582 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CNTN6	Q9UQ52	1028 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CDYL	Q9Y232	598 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RUVBL1	Q9Y265	456 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	R3HDM2	Q9Y2K5	976 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	PCDHAC2	Q9Y5I4	1007 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CD2AP	Q9Y5K6	639 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZHX2	Q9Y6X8	837 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MYLK	Q15746	1914 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MCM3AP	O60318	1980 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CCDC195	A0A1B0GUA6	201 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CCDC189	A1A4V9	331 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FAM47DP	A6NHR8	397 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858		A8MUI8	341 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858		E7ENX8	843 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858		E7ESA3	106 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	PPP1R12A	O14974	1030 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	WDR46	O15213	610 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	SLC16A4	O15374	487 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TRIAP1	O43715	76 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	LIAS	O43766	372 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TYROBP	O43914	113 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ECE2	O60344	883 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	HNRNPCL1	O60812	293 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	EDF1	O60869	148 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	ATP2C2	O75185	946 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GPR32	O75388	356 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	DCTN3	O75935	186 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ATP5H	O75947	161 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FAM155B	O75949	473 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	HAUS5	O94927	633 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	STBD1	O95210	358 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	LUC7L3	O95232	432 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	CLTA	P09496	248 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	RALA	P11233	206 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	BRAF	P15056	766 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ACADS	P16219	412 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	TSHR	P16473	764 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GNAZ	P19086	355 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	POU3F2	P20265	443 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	HMGB2	P26583	209 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	PCSK1	P29120	753 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ALDH1B1	P30837	517 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	MAPK4	P31152	587 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	SFN	P31947	248 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	FOXN2	P32314	431 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	STX2	P32856	288 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	CDH5	P33151	784 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	ABCD1	P33897	745 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	GCK	P35557	465 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	QARS	P47897	775 aa	Known RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	NPTX2	P47972	431 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	ZNF132	P52740	706 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	COL4A4	P53420	1690 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	TAS2R40	P59535	323 aa		2.55	□□□□□ -2
SPG11-223	ENST00000560858	IRX1	P78414	480 aa	Predicted RBP	2.55	□□□□□ -2
SPG11-223	ENST00000560858	MRPS9	P82933	396 aa	Known RBP	2.55	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 18 ms