RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 CDK16Q00536 496 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ZBTB16Q05516 673 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 LBRQ14739 615 aaKnown RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 SLMAPQ14BN4 828 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 INAVAQ3KP66 663 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 INO80DQ53TQ3 878 aaPredicted RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 KIAA0895LQ68EN5 471 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 EMBQ6PCB8 327 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 KIAA0907Q7Z7F0 614 aaPredicted RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 PDIK1LQ8N165 341 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 PAF1Q8N7H5 531 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 DCAF4L2Q8NA75 395 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 NETO2Q8NC67 525 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 OR7D4Q8NG98 312 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 PIP4K2CQ8TBX8 421 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ACE2Q9BYF1 805 aaPredicted RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 POLR1EQ9GZS1 481 aaKnown RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 PABPC3Q9H361 631 aaKnown RBP11.89□□□□□ -0.51
LDLR-212ENST00000560467 FBRSQ9HAH7 460 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 SGK2Q9HBY8 427 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 ARFGAP3Q9NP61 516 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 RAB21Q9UL25 225 aa11.89□□□□□ -0.51
LDLR-212ENST00000560467 MUC22E2RYF6 1773 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 A0A1B0GTQ1 180 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ESYT3A0FGR9 886 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 J3KR12 359 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 DNALI1O14645 258 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 SEC31AO94979 1220 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 ASLP04424 464 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 WNT1P04628 370 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 APRTP07741 180 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ETS1P14921 441 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ABCG1P45844 678 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 RECQLP46063 649 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 RPL21P46778 160 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 ITGA8P53708 1063 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 GEMP55040 296 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 GDF10P55107 478 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ARL4CP56559 192 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 RACK1P63244 317 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 RAD51Q06609 339 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 WASHC5Q12768 1159 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 DNAJC3Q13217 504 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 SHBQ15464 509 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 DNAJC21Q5F1R6 531 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 CXorf57Q6NSI4 855 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 NCEH1Q6PIU2 408 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 CENPUQ71F23 418 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 LINC00523Q86TU6 105 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ZNF567Q8N184 647 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 TAB3Q8N5C8 712 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 ATP11CQ8NB49 1132 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 LRRN4Q8WUT4 740 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 SEC14L1Q92503 715 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ART4Q93070 314 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 MYEOVQ96EZ4 313 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 MYO19Q96H55 970 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 LMLNQ96KR4 655 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 FMO2Q99518 471 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 IL12RB2Q99665 862 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 RSPH9Q9H1X1 276 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 NOL6Q9H6R4 1146 aaKnown RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 EBF2Q9HAK2 575 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 NT5MQ9NPB1 228 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 FBXL12Q9NXK8 326 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 ZNF212Q9UDV6 495 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 NFU1Q9UMS0 254 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 SHOC2Q9UQ13 582 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 NEU2Q9Y3R4 380 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 FARP1Q9Y4F1 1045 aaPredicted RBP11.88□□□□□ -0.51
LDLR-212ENST00000560467 PTPRBP23467 1997 aa11.88□□□□□ -0.51
LDLR-212ENST00000560467 BPTFQ12830 3046 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 KNTC1P50748 2209 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 A0A1W2PP55 124 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 A0A1W2PPC4 97 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 WNT9AO14904 365 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 VILLO15195 856 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 MID1O15344 667 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 SIN3BO75182 1162 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 VAV1P15498 845 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 MZF1P28698 734 aaPredicted RBP11.87□□□□□ -0.51
LDLR-212ENST00000560467 CARSP49589 748 aaKnown RBP11.87□□□□□ -0.51
LDLR-212ENST00000560467 VSNL1P62760 191 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 ECT2LQ008S8 904 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 ACCSLQ4AC99 568 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 FSCBQ5H9T9 825 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 PITRM1Q5JRX3 1037 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 RALGPS1Q5JS13 557 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 TMPRSS12Q86WS5 348 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 TP53INP2Q8IXH6 220 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 TEX26Q8N6G2 289 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 MAML1Q92585 1016 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 NXPE2Q96DL1 559 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 CNDP2Q96KP4 475 aaKnown RBP11.87□□□□□ -0.51
LDLR-212ENST00000560467 ELF4Q99607 663 aaPredicted RBP11.87□□□□□ -0.51
LDLR-212ENST00000560467 FSD1LQ9BXM9 530 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 SLC25A51Q9H1U9 297 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 GBA3Q9H227 469 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 LRRC40Q9H9A6 602 aa11.87□□□□□ -0.51
LDLR-212ENST00000560467 ETNK1Q9HBU6 452 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms