RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 NAA30Q147X3 362 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 TRADDQ15628 312 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 LONRF1Q17RB8 773 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 KLHL38Q2WGJ6 581 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 AARS2Q5JTZ9 985 aaKnown RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 FNBP1LQ5T0N5 605 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CERCAMQ5T4B2 595 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 IER5LQ5T953 404 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 AFTPHQ6ULP2 937 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 Q6ZS52 159 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 TRIM67Q6ZTA4 783 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 DPPA4Q7L190 304 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CROCCP2Q86T23 111 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 HDDC3Q8N4P3 179 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 GOLGA6L1Q8N7Z2 621 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CALML6Q8TD86 181 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 STYXQ8WUJ0 223 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PIH1D2Q8WWB5 315 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 ERLEC1Q96DZ1 483 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PKNOX2Q96KN3 472 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 MCCC1Q96RQ3 725 aaPredicted RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 TTC1Q99614 292 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 C19orf43Q9BQ61 176 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 FAM167BQ9BTA0 163 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 NEUROG2Q9H2A3 272 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CDC42EP4Q9H3Q1 356 aaKnown RBP11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PPCSQ9HAB8 311 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 PCDH12Q9NPG4 1184 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 FBXL12Q9NXK8 326 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 NSMCE4AQ9NXX6 385 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 TEX264Q9Y6I9 313 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 FAM169AQ9Y6X4 670 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 CEP192Q8TEP8 1941 aa11.23□□□□□ -0.61
SHMT2-220ENST00000555634 A0A1W2PP55 124 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 LRRC72A6NJI9 287 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 TSPAN6O43657 245 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 AP1G1O43747 822 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ZNF217O75362 1048 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ACSL3O95573 720 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ABHD2P08910 425 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ALPIP09923 528 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 MYBL2P10244 700 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 OXTRP30559 389 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 MMP12P39900 470 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 P2RY2P41231 377 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 GRIA1P42261 906 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 COPAP53621 1224 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 RPS14P62263 151 aaKnown RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 CRADDP78560 199 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 NAB1Q13506 487 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 OLIG2Q13516 323 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 CRYMQ14894 314 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ZNF284Q2VY69 593 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 HP1BP3Q5SSJ5 553 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 FAM182AQ5T1J6 154 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 LRRC66Q68CR7 880 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 PDPK2PQ6A1A2 396 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ANO7Q6IWH7 933 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 KIAA1161Q6NSJ0 714 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 KIAA1211LQ6NV74 962 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 PKN3Q6P5Z2 889 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 CAPN12Q6ZSI9 719 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 RASSF3Q86WH2 238 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 RAVER1Q8IY67 606 aaKnown RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 MREGQ8N565 214 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 CAMKK1Q8N5S9 505 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 CLDN23Q96B33 292 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 C9orf72Q96LT7 481 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 NECAB3Q96P71 396 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 LYSMD1Q96S90 227 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 FAM129BQ96TA1 746 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 KIFC1Q9BW19 673 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 KDM4CQ9H3R0 1056 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 PREBQ9HCU5 417 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 POLR3BQ9NW08 1133 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 SPATA6Q9NWH7 488 aaPredicted RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 ZFATQ9P243 1243 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 B4GALT6Q9UBX8 382 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 APPL1Q9UKG1 709 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 RIMKLBQ9ULI2 386 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 VPS9D1Q9Y2B5 631 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.22□□□□□ -0.61
SHMT2-220ENST00000555634 SLC30A1Q9Y6M5 507 aa11.22□□□□□ -0.61
SHMT2-220ENST00000555634 EXOC1LA0A1B0GW35 172 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 A0A1W2PQF6 199 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 RGSL1A5PLK6 1076 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 NPIPB15A6NHN6 443 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-220ENST00000555634 F8W8V4 182 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 TP73O15350 636 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 LZTS3O60299 673 aaPredicted RBP11.21□□□□□ -0.61
SHMT2-220ENST00000555634 RPP40O75818 363 aaKnown RBP11.21□□□□□ -0.61
SHMT2-220ENST00000555634 PCDH8O95206 1070 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 PRLP01236 227 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 PYGLP06737 847 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 FAM153BP0C7A2 387 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 PIRTP0C851 137 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 NDUFV2P19404 249 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 ITGALP20701 1170 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 HNF1BP35680 557 aa11.21□□□□□ -0.61
SHMT2-220ENST00000555634 HMGCLP35914 325 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms