RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 PIH1D2Q8WWB5 315 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 CALR3Q96L12 384 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 OLFM3Q96PB7 478 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 IL12RB2Q99665 862 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 SEMA3CQ99985 751 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 BOCQ9BWV1 1114 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 SLC13A1Q9BZW2 595 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 BRD8Q9H0E9 1235 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 NT5MQ9NPB1 228 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 LUC7LQ9NQ29 371 aaKnown RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 DNPEPQ9ULA0 475 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 RAI2Q9Y5P3 530 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 SHROOM3Q8TF72 1996 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 RASGRP1O95267 797 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 PRKCGP05129 697 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 CA4P22748 312 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 KELP23276 732 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 DAB2P98082 770 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 ALG11Q2TAA5 492 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 HES3Q5TGS1 186 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 CCDC13Q8IYE1 715 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 RBFAQ8N0V3 343 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 NDUFAF2Q8N183 169 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 PAF1Q8N7H5 531 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 DCBLD1Q8N8Z6 715 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 TPCN2Q8NHX9 752 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 ARRDC2Q8TBH0 407 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 DTD2Q96FN9 168 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 WDR92Q96MX6 357 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 TDRD1Q9BXT4 1180 aaKnown RBP16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 RBM22Q9NW64 420 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 PKD1L2Q7Z442 2459 aa16.08■□□□□ 0.16
CCDC88C-209ENST00000554872 KNTC1P50748 2209 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 CFAP47Q6ZTR5 3102 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 TTC24A2A3L6 582 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 NPIPB15A6NHN6 443 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PDE2AO00408 941 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 GCATO75600 419 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 NEBLO76041 1014 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PCCBP05166 539 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 ALPIP09923 528 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 TSHRP16473 764 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 ZNF30P17039 623 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 COMTP21964 271 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 LHCGRP22888 699 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 CYLC1P35663 651 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 MAGEA1P43355 309 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 INSM1Q01101 510 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 DPTQ07507 201 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PDK1Q15118 436 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 ELOCQ15369 112 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 SLC14A2Q15849 920 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PRRT3Q5FWE3 981 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 C6orf132Q5T0Z8 1188 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 CDCP2Q5VXM1 449 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 C11orf63Q6NUN7 778 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PNCKQ6P2M8 343 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 NLRP8Q86W28 1048 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 PLA2G15Q8NCC3 412 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 TRAF3IP1Q8TDR0 691 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 LMX1AQ8TE12 382 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 FUBP1Q96AE4 644 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 NUS1Q96E22 293 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 LYSMD1Q96S90 227 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 RBM15Q96T37 977 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 RBSNQ9H1K0 784 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 TCEAL2Q9H3H9 227 aaPredicted RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 CCDC86Q9H6F5 360 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 WDR26Q9H7D7 661 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 KLQ9UEF7 1012 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 OR1A2Q9Y585 309 aa16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 TDRD6O60522 2096 aaKnown RBP16.07■□□□□ 0.16
CCDC88C-209ENST00000554872 GOLGA4Q13439 2230 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 A0A0J9YYE9 177 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 EME2A4GXA9 379 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 SRRM3A6NNA2 597 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 CACNB4O00305 520 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 APOL1O14791 398 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 PPP1R12AO14974 1030 aaPredicted RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 TRBC1P01850 177 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 KRT1P04264 644 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 HLA-DQB2P05538 268 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 JUPP14923 745 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 CDKN2BP42772 138 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 NR2C2P49116 596 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 RPIAP49247 311 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 SRP54P61011 504 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 SEMG2Q02383 582 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 IHHQ14623 411 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 SPA17Q15506 151 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 CCDC157Q569K6 752 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 ZFYVE27Q5T4F4 411 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 FAXCQ5TGI0 409 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 ZNF765Q7L2R6 523 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 OR56A4Q8NGH8 313 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 PDCD6IPQ8WUM4 868 aaKnown RBP16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 GLMNQ92990 594 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 NAT6Q93015 286 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 TEX101Q9BY14 249 aa16.06■□□□□ 0.16
CCDC88C-209ENST00000554872 NRSN2Q9GZP1 204 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms