RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 RFX8Q6ZV50 586 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 PARS2Q7L3T8 475 aaKnown RBP12.55□□□□□ -0.4
SHMT2-214ENST00000554604 GATAD2AQ86YP4 633 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 PSTKQ8IV42 348 aaKnown RBP12.55□□□□□ -0.4
SHMT2-214ENST00000554604 CHCHD4Q8N4Q1 142 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 PNPLA1Q8N8W4 532 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 CCDC89Q8N998 374 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 TTC13Q8NBP0 860 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 NETO2Q8NC67 525 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 FAM76AQ8TAV0 307 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 UBLCP1Q8WVY7 318 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-214ENST00000554604 ATG4AQ8WYN0 398 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 RAPGEF5Q92565 580 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 CELF6Q96J87 481 aaKnown RBP12.55□□□□□ -0.4
SHMT2-214ENST00000554604 PEBP4Q96S96 227 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 OSBPL1AQ9BXW6 950 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 KLC2Q9H0B6 622 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 TSPYL1Q9H0U9 437 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 ERVMER34-1Q9H9K5 563 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 TMBIM4Q9HC24 238 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 KLHL11Q9NVR0 708 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 UBA2Q9UBT2 640 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-214ENST00000554604 FTSJ1Q9UET6 329 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 ASIC3Q9UHC3 531 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 WASF3Q9UPY6 502 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 CA5BQ9Y2D0 317 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 LRRK1Q38SD2 2015 aa12.55□□□□□ -0.4
SHMT2-214ENST00000554604 KMT2BQ9UMN6 2715 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ACACAQ13085 2346 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 COL5A1P20908 1838 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ARHGAP42A6NI28 874 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 HMGB1P1B2RPK0 211 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 NDC80O14777 642 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 TSPAN6O43657 245 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 AP1G1O43747 822 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 NUDT17P0C025 328 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 THEGLP0DJG4 465 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 KRT10P13645 584 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 KDELR1P24390 212 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 IVDP26440 423 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 IL1R2P27930 398 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ZNF135P52742 658 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 SGCGQ13326 291 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ST3GAL2Q16842 350 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 CCDC157Q569K6 752 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 TTMPQ5BVD1 217 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 AGBL2Q5U5Z8 902 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 SEL1L3Q68CR1 1132 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 UNQ6494/PRO21346Q6UXR6 183 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 GDPD4Q6W3E5 623 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 BBS12Q6ZW61 710 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 RAB44Q7Z6P3 723 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 CROCCP2Q86T23 111 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 TTC7BQ86TV6 843 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 BAHD1Q8TBE0 780 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ADAMTS14Q8WXS8 1223 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 RAB7BQ96AH8 199 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ARL8AQ96BM9 186 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 KLHL32Q96NJ5 620 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 KCTD15Q96SI1 283 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 CALN1Q9BXU9 219 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 SLC17A9Q9BYT1 436 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 FOXP3Q9BZS1 431 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ZWILCHQ9H900 591 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 FZD3Q9NPG1 666 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 KLK13Q9UKR3 277 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ZFR2Q9UPR6 939 aaKnown RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ATP8A1Q9Y2Q0 1164 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 NEUROG3Q9Y4Z2 214 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 FADS3Q9Y5Q0 445 aa12.54□□□□□ -0.4
SHMT2-214ENST00000554604 ANKRD11Q6UB99 2663 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-214ENST00000554604 PLXNB3Q9ULL4 1909 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 GOLGA6L10A6NI86 522 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 A6NNZ2 444 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 H3BRJ5 948 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 DFFAO00273 331 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 TNFSF14O43557 240 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 PAK4O96013 591 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 KRT14P02533 472 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 ATXN1LP0C7T5 689 aaKnown RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 ERCC2P18074 760 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 XPAP23025 273 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 EPHA8P29322 1005 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 ARL4AP40617 200 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 SKOR1P84550 965 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 ZNF844Q08AG5 666 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 TUBB8Q3ZCM7 444 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 TMEM259Q4ZIN3 620 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 BOLA3Q53S33 107 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 CEP85LQ5SZL2 805 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 KAZNQ674X7 775 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 CEP128Q6ZU80 1094 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 PTAR1Q7Z6K3 402 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 SLCO6A1Q86UG4 719 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 VSIG1Q86XK7 387 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 SPATS2Q86XZ4 545 aaKnown RBP12.53□□□□□ -0.4
SHMT2-214ENST00000554604 TMEM145Q8NBT3 493 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 SLC35B2Q8TB61 432 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 SAP25Q8TEE9 199 aa12.53□□□□□ -0.4
SHMT2-214ENST00000554604 TEKT4Q8WW24 435 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms