RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 CHRNA4P43681 627 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF772Q68DY9 489 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 ELMSAN1Q6PJG2 1045 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 THAP11Q96EK4 314 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 CENPNQ96H22 339 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 FEM1CQ96JP0 617 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 NPLQ9BXD5 320 aaPredicted RBP17.6■□□□□ 0.41
SYNE3-202ENST00000553340 MAP10Q9P2G4 905 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 EGFL7Q9UHF1 273 aa17.6■□□□□ 0.41
SYNE3-202ENST00000553340 RBM47A0AV96 593 aaKnown RBP17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ANGPT2O15123 496 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 MATN3O15232 486 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TPST1O60507 370 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 C7P10643 843 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 HSD17B1P14061 328 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 UGT1A6P19224 532 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 LEPRP48357 1165 aaKnown RBP17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SLC14A2Q15849 920 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 LCN8Q6JVE9 175 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 RANBP10Q6VN20 620 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SPNS2Q8IVW8 549 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SLC15A3Q8IY34 581 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 MINDY1Q8N5J2 469 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SEPT8Q92599 483 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 L3HYPDHQ96EM0 354 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 LRCH3Q96II8 777 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 C3orf30Q96M34 536 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SIK2Q9H0K1 926 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 AKTIPQ9H8T0 292 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 CD320Q9NPF0 282 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 C8orf4Q9NR00 106 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TBC1D23Q9NUY8 699 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.59■□□□□ 0.41
SYNE3-202ENST00000553340 MAFKO60675 156 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SFSWAPQ12872 951 aaKnown RBP17.59■□□□□ 0.41
SYNE3-202ENST00000553340 MYLKQ15746 1914 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ATP6AP1Q15904 470 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF678Q5SXM1 525 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 HECTD2Q5U5R9 776 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 LYSMD3Q7Z3D4 306 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TAC4Q86UU9 113 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ARHGAP12Q8IWW6 846 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 CLYBLQ8N0X4 340 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ANKRD49Q8WVL7 239 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 CYGBQ8WWM9 190 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.59■□□□□ 0.412e-6■■■■■ 54.9
SYNE3-202ENST00000553340 PCED1BQ96HM7 432 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ALG9Q9H6U8 611 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 LTBP3Q9NS15 1303 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TBC1D13Q9NVG8 400 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ACTR3BQ9P1U1 418 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 TDRKHQ9Y2W6 561 aaKnown RBP17.59■□□□□ 0.41
SYNE3-202ENST00000553340 SH3GLB1Q9Y371 365 aa17.59■□□□□ 0.41
SYNE3-202ENST00000553340 ZNF236Q9UL36 1845 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 MMP3P08254 477 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 BAG6P46379 1132 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 CCT8P50990 548 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 SLC5A3P53794 718 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 TMTC4Q5T4D3 741 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 TERB1Q8NA31 727 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 SLC16A10Q8TF71 515 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 MRGPRX2Q96LB1 330 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 RBM22Q9NW64 420 aaKnown RBP eCLIP17.58■□□□□ 0.41
SYNE3-202ENST00000553340 OAZ3Q9UMX2 235 aa17.58■□□□□ 0.41
SYNE3-202ENST00000553340 MYBPHLA2RUH7 354 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 CLOCKO15516 846 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 ATE1O95260 518 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 RASAL1O95294 804 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 HLA-DQB2P05538 268 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 MYL3P08590 195 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 TPP2P29144 1249 aaPredicted RBP17.58■□□□□ 0.4
SYNE3-202ENST00000553340 IREB2P48200 963 aaKnown RBP17.58■□□□□ 0.4
SYNE3-202ENST00000553340 VPS26BQ4G0F5 336 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 ABRAXAS1Q6UWZ7 409 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 BHLHA9Q7RTU4 235 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 COLGALT2Q8IYK4 626 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 CMTR2Q8IYT2 770 aaKnown RBP17.58■□□□□ 0.4
SYNE3-202ENST00000553340 MIER2Q8N344 545 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 GIPC3Q8TF64 312 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 MYRFLQ96LU7 910 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 RPF2Q9H7B2 306 aaKnown RBP17.58■□□□□ 0.4
SYNE3-202ENST00000553340 TMEM30AQ9NV96 361 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 GID8Q9NWU2 228 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 VWA7Q9Y334 891 aa17.58■□□□□ 0.4
SYNE3-202ENST00000553340 CBFA2T3O75081 653 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 FCGR1AP12314 374 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 CYP2C18P33260 490 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 PMS2P3Q13401 168 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 UGT3A2Q3SY77 523 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 FAM219BQ5XKK7 198 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 OTOFQ9HC10 1997 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 H3BMQ9 156 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 CLASP2O75122 1294 aaKnown RBP17.57■□□□□ 0.4
SYNE3-202ENST00000553340 DCKP27707 260 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 RAB15P59190 212 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 ZNF792Q3KQV3 632 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 UNC50Q53HI1 259 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 UBXN11Q5T124 520 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 GPR107Q5VW38 600 aa17.57■□□□□ 0.4
SYNE3-202ENST00000553340 SPRED1Q7Z699 444 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms