RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CDH18Q13634 790 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CYLC2Q14093 348 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HNRNPDQ14103 355 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RBBP7Q16576 425 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 UGP2Q16851 508 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TRIM60Q495X7 471 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HECTD3Q5T447 861 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SMYD5Q6GMV2 418 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CCSAPQ6IQ19 270 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TIFABQ6ZNK6 161 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 AMIGO2Q86SJ2 522 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CUZD1Q86UP6 607 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 LMNTD2Q8IXW0 634 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SIDT2Q8NBJ9 832 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CDC26Q8NHZ8 85 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ACMSDQ8TDX5 336 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CASD1Q96PB1 797 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PKMYT1Q99640 499 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TUBB6Q9BUF5 446 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM39AQ9NV64 488 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM161AQ9NX61 479 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 EGFL7Q9UHF1 273 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SCML2Q9UQR0 700 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 LOC285556D6RIA3 1793 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 A0A088AWK7 358 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ARHGEF37A1IGU5 675 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 NPEPPSL1A6NEC2 478 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 A8MT66 165 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CAPN14A8MX76 684 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 FFAR3O14843 346 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GPR42O15529 346 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GRID2O43424 1007 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ACSL4O60488 711 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 MTX2O75431 263 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PEX2P28328 305 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 HOXC8P31273 242 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 VHLP40337 213 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ARCN1P48444 511 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DEFB103AP81534 67 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DSC1Q08554 894 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CBX2Q14781 532 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 NRF1Q16656 503 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 MAP7D1Q3KQU3 841 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SLC44A4Q53GD3 710 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 WASHC2DQ5SRD0 308 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 AGAP9Q5VTM2 703 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 LHX8Q68G74 356 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 IYDQ6PHW0 289 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 KDELC1Q6UW63 502 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ZYG11AQ6WRX3 759 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DNAJC14Q6Y2X3 702 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PIANPQ8IYJ0 282 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 HS6ST3Q8IZP7 471 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 LSMEM2Q8N112 164 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 LZTR1Q8N653 840 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 OR13J1Q8NGT2 312 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 WFDC5Q8TCV5 224 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ZNF398Q8TD17 642 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SLC22A17Q8WUG5 538 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 PTERQ96BW5 349 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CMTM5Q96DZ9 223 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 MYCBPQ99417 103 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SLC30A3Q99726 388 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 UBE2OQ9C0C9 1292 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CERS4Q9HA82 394 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 EBF2Q9HAK2 575 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CD274Q9NZQ7 290 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ZNHIT2Q9UHR6 403 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CD84Q9UIB8 345 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 DNMT3LQ9UJW3 386 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CLEC4EQ9ULY5 219 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ARHGAP26Q9UNA1 814 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 AURKCQ9UQB9 309 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 RAP2CQ9Y3L5 183 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 RAI2Q9Y5P3 530 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 XIRP2A4UGR9 3374 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 URB1O60287 2271 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 ARHGAP10A1A4S6 786 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CAPN8A6NHC0 703 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 UPK3BL1B0FP48 263 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 UPK3BL2E5RIL1 263 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SMAD6O43541 496 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 CABYRO75952 493 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 TM7SF2O76062 418 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 BAIAP3O94812 1187 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 SEC24DO94855 1032 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 OAZ2O95190 189 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 VNN2O95498 520 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 EOMESO95936 686 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 LTA4HP09960 611 aaKnown RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GABRR2P28476 465 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 MC4RP32245 332 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GCKP35557 465 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 GDF5P43026 501 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 VEGFBP49765 207 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 STK19P49842 368 aaPredicted RBP5.6□□□□□ -1.51
LIMA1-215ENST00000552823 THOP1P52888 689 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 POLE2P56282 527 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 C1QTNF8P60827 252 aa5.6□□□□□ -1.51
LIMA1-215ENST00000552823 AP2B1P63010 937 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms