RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 RBM20Q5T481 1227 aaKnown RBP15.71■□□□□ 0.11
CUX1-211ENST00000546411 ZYG11AQ6WRX3 759 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 GPR141Q7Z602 305 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 C11orf74Q86VG3 221 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 HORMAD1Q86X24 394 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 VRTNQ9H8Y1 702 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 VPS45Q9NRW7 570 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 RPL26L1Q9UNX3 145 aaKnown RBP15.71■□□□□ 0.11
CUX1-211ENST00000546411 ARL5AQ9Y689 179 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 PTGES3LE9PB15 166 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 TRIM38O00635 465 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 NRP2O60462 931 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 CNMDO75829 334 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 AFF1P51825 1210 aaKnown RBP15.71■□□□□ 0.11
CUX1-211ENST00000546411 PLEKHG4Q58EX7 1191 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 RDH11Q8TC12 318 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 RTKNQ9BST9 563 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 OPTCQ9UBM4 332 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 KCTD3Q9Y597 815 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 TNFAIP8O95379 198 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 FGF1P05230 155 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 KCNE1P15382 129 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 RHOQP17081 205 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 GSTT1P30711 240 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 LPCAT2Q7L5N7 544 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 LRRC49Q8IUZ0 686 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 FCRL3Q96P31 734 aaPredicted RBP15.71■□□□□ 0.11
CUX1-211ENST00000546411 NOL11Q9H8H0 719 aaKnown RBP15.71■□□□□ 0.11
CUX1-211ENST00000546411 GKN1Q9NS71 199 aa15.71■□□□□ 0.11
CUX1-211ENST00000546411 URB1O60287 2271 aaKnown RBP15.71■□□□□ 0.1
CUX1-211ENST00000546411 NPEPPSL1A6NEC2 478 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 ZBTB42B2RXF5 422 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 DAB2P98082 770 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 SQLEQ14534 574 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 RIN3Q8TB24 985 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 TTPALQ9BTX7 342 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 PCDHAC1Q9H158 963 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 SH3BP4Q9P0V3 963 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 KIAA0100Q14667 2235 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 A0A0J9YYE9 177 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 HLA-DPA1P20036 260 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 PSEN1P49768 467 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 CHN2P52757 468 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 PURAQ00577 322 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 HNRNPDQ14103 355 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 SPDYE7PQ495Y7 208 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 TSTD2Q5T7W7 516 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 CLVS1Q8IUQ0 354 aaPredicted RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 CLHC1Q8NHS4 586 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 KBTBD7Q8WVZ9 684 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 NTAN1Q96AB6 310 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 ZDHHC6Q9H6R6 413 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 EIF2B3Q9NR50 452 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 SEPT4O43236 478 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 ZBTB14O43829 449 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 GOT2P00505 430 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 NTRK1P04629 796 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 RPL38P63173 70 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 CRY1Q16526 586 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 TRNP1Q6NT89 227 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 ANKS3Q6ZW76 656 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 PIM3Q86V86 326 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 LPGAT1Q92604 370 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 OTULINQ96BN8 352 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 ZNF570Q96NI8 536 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 SLC39A3Q9BRY0 314 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 MIOSQ9NXC5 875 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 GTF2IRD1Q9UHL9 959 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 FAM32AQ9Y421 112 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 TRAFD1O14545 582 aaPredicted RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 TACR2P21452 398 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 CORO1AP31146 461 aaKnown RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 PAOXQ6QHF9 649 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 NAPRTQ6XQN6 538 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 SLC7A6OSQ96CW6 309 aaPredicted RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 PPM1MQ96MI6 270 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 C2orf49Q9BVC5 232 aaPredicted RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 OXCT2Q9BYC2 517 aaPredicted RBP15.7■□□□□ 0.1
CUX1-211ENST00000546411 ADAMTS10Q9H324 1103 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 TMEM161AQ9NX61 479 aa15.7■□□□□ 0.1
CUX1-211ENST00000546411 LZTS3O60299 673 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 CNTN5O94779 1100 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 KRT6AP02538 564 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 KRT6BP04259 564 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 KRT6CP48668 564 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 PCLAFQ15004 111 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 TSNQ15631 228 aaKnown RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 VPS37AQ8NEZ2 397 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 NAT14Q8WUY8 206 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 FAM124BQ9H5Z6 455 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 IRAK4Q9NWZ3 460 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 DNAJC28Q9NX36 388 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 ZDHHC2Q9UIJ5 367 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 CORO1CQ9ULV4 474 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 BCORQ6W2J9 1755 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 C16orf96A6NNT2 1141 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 KPNA3O00505 521 aaPredicted RBP15.69■□□□□ 0.1
CUX1-211ENST00000546411 MGEA5O60502 916 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 AQP4P55087 323 aa15.69■□□□□ 0.1
CUX1-211ENST00000546411 C6orf52Q5T4I8 152 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms