RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 MTM1Q13496 603 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 SPIDRQ14159 915 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 GRM3Q14832 879 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ELOCQ15369 112 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CFAP58Q5T655 872 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ERMARDQ5T6L9 678 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 BROXQ5VW32 411 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ERAP2Q6P179 960 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 BRAT1Q6PJG6 821 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 LVRNQ6Q4G3 990 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 LIPIQ6XZB0 460 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 RFX8Q6ZV50 586 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CYP4V2Q6ZWL3 525 aaPredicted RBP8.51□□□□□ -1.05
USP28-215ENST00000545608 B3GNT8Q7Z7M8 397 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 SFTPA2Q8IWL1 248 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ZNF843Q8N446 348 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 AOPEPQ8N6M6 819 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 NPWQ8N729 165 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ARL10Q8N8L6 244 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 KYQ8NBH2 561 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 WDR36Q8NI36 951 aaKnown RBP8.51□□□□□ -1.05
USP28-215ENST00000545608 PCDH19Q8TAB3 1148 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 WDR48Q8TAF3 677 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 OR1E3Q8WZA6 343 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 FUBP1Q96AE4 644 aaKnown RBP8.51□□□□□ -1.05
USP28-215ENST00000545608 CCDC74AQ96AQ1 378 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 ECHDC3Q96DC8 303 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 PDXPQ96GD0 296 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 WDR92Q96MX6 357 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 TUBGCP5Q96RT8 1024 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP8.51□□□□□ -1.05
USP28-215ENST00000545608 DPH1Q9BZG8 443 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 SYNDIG1Q9H7V2 258 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 PARVAQ9NVD7 372 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 DONSONQ9NYP3 566 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 KLQ9UEF7 1012 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 GPR34Q9UPC5 381 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 SHROOM3Q8TF72 1996 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 RP1P56715 2156 aa8.51□□□□□ -1.05
USP28-215ENST00000545608 CCDC187A0A096LP49 1063 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 A0A1W2PQM1 296 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 TTC24A2A3L6 582 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 CFAP69A5D8W1 941 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 TMEM202A6NGA9 273 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 LRRC53A6NM62 1247 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 A8MX80 341 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 ERVH48-1M5A8F1 160 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 DFFAO00273 331 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 DDX3XO00571 662 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP28-215ENST00000545608 TRAFD1O14545 582 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 TNFSF15O95150 251 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 TNFP01375 233 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 FTLP02792 175 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 DESP17661 470 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 SERPINA4P29622 427 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 UCNP55089 124 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 CFHR1Q03591 330 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 BCL2L1Q07817 233 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 IL10RBQ08334 325 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 NSUN2Q08J23 767 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP28-215ENST00000545608 TAF1BQ53T94 588 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 PPP6R3Q5H9R7 873 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 E4F1Q66K89 784 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 OGFOD3Q6PK18 319 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 ZNF571Q7Z3V5 609 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 GKN2Q86XP6 184 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 COL27A1Q8IZC6 1860 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 PELI3Q8N2H9 469 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 SDR16C5Q8N3Y7 309 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 GPR156Q8NFN8 814 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 SCG3Q8WXD2 468 aaKnown RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 RBM15Q96T37 977 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP28-215ENST00000545608 CINPQ9BW66 212 aaPredicted RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 LGR4Q9BXB1 951 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 HAUS4Q9H6D7 363 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 ATP13A3Q9H7F0 1226 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 SP110Q9HB58 689 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 FGF22Q9HCT0 170 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 MRPL40Q9NQ50 206 aaKnown RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 CWC15Q9P013 229 aaKnown RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 CNOT8Q9UFF9 292 aaKnown RBP8.5□□□□□ -1.05
USP28-215ENST00000545608 MYO6Q9UM54 1294 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 PCDHGA11Q9Y5H2 935 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 DGKBQ9Y6T7 804 aa8.5□□□□□ -1.05
USP28-215ENST00000545608 EIF3CLB5ME19 914 aaKnown RBP8.49□□□□□ -1.05
USP28-215ENST00000545608 PRPSAP2O60256 369 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 NOBOXO60393 691 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 LRCH4O75427 683 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 RNF8O76064 485 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 RPLP0P05388 317 aaKnown RBP8.49□□□□□ -1.05
USP28-215ENST00000545608 GZMAP12544 262 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 SKILP12757 684 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 AMPD1P23109 780 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 IL1R2P27930 398 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 TRIM23P36406 574 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 HCAR3P49019 387 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 SCNN1BP51168 640 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 RAB15P59190 212 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 KIAA1024LP59773 190 aa8.49□□□□□ -1.05
USP28-215ENST00000545608 RHDQ02161 417 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms