RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 OR52K1Q8NGK4 314 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 FOXJ1Q92949 421 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 SNF8Q96H20 258 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 WRAP53Q9BUR4 548 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 TRIM31Q9BZY9 425 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 DUSP15Q9H1R2 295 aaPredicted RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 TRABDQ9H4I3 376 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 FAM86C1Q9NVL1 165 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 DMDP11532 3685 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 TCRBV7S3A2A0A539 114 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 METTL12A8MUP2 240 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 SMAPO00193 183 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 NDC80O14777 642 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 MMP20O60882 483 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 ELFN1P0C7U0 828 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 PIRTP0C851 137 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 LHCGRP22888 699 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 GRIA1P42261 906 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 TMEM259Q4ZIN3 620 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 RNASEH2BQ5TBB1 312 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 ANKRD22Q5VYY1 191 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 IZUMO3Q5VZ72 239 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 LRRC66Q68CR7 880 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 LIPIQ6XZB0 460 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 TSPAN33Q86UF1 283 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 HOOK3Q86VS8 718 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 BBOF1Q8ND07 529 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 MCUQ8NE86 351 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 ATOH1Q92858 354 aaPredicted RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 ZC3H10Q96K80 434 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 CASS4Q9NQ75 786 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 ZFR2Q9UPR6 939 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 SPO11Q9Y5K1 396 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 ANKRD36A6QL64 1941 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 C1orf232A0A0U1RR37 186 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 IGLON5A6NGN9 336 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 PSMD11O00231 422 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 LATO43561 262 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 TM7SF2O76062 418 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 RHOBTB1O94844 696 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 SEC31AO94979 1220 aaKnown RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 FSBPO95073 299 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 CLDN7O95471 211 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 RPL21P46778 160 aaKnown RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 PPP2CBP62714 309 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 PPP2CAP67775 309 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 SGCGQ13326 291 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 MSLNQ13421 630 aaPredicted RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 SIM2Q14190 667 aaPredicted RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 ELF2Q15723 593 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 CNGA3Q16281 694 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 CDKN3Q16667 212 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 PLK5Q496M5 336 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 SEL1L3Q68CR1 1132 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 PMS2CLQ68D20 193 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 DUPD1Q68J44 220 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 LRRC8BQ6P9F7 803 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 TMEFF1Q8IYR6 380 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 CBARPQ8N350 705 aaPredicted RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 DEFB119Q8N690 84 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 BLOC1S5Q8TDH9 187 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 BIRC7Q96CA5 298 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 C1QTNF2Q9BXJ5 285 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 SLC17A9Q9BYT1 436 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 GPR63Q9BZJ6 419 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 ZFYVE1Q9HBF4 777 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 SHOC2Q9UQ13 582 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 ZBTB32Q9Y2Y4 487 aaPredicted RBP17.15■□□□□ 0.34
LIG1-204ENST00000542460 SNX24Q9Y343 169 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 ZNF711Q9Y462 761 aa17.15■□□□□ 0.34
LIG1-204ENST00000542460 PIEZO1Q92508 2521 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 LZTS3O60299 673 aaPredicted RBP17.14■□□□□ 0.33
LIG1-204ENST00000542460 TMEM63AO94886 807 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 IGHV4-34P06331 123 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 C6P13671 934 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 TPH1P17752 444 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 MAT2AP31153 395 aaKnown RBP17.14■□□□□ 0.33
LIG1-204ENST00000542460 NUDT1P36639 197 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 PTSQ03393 145 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 CALCOCO2Q13137 446 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 MORF4L2Q15014 288 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 ZNF284Q2VY69 593 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 LYSMD3Q7Z3D4 306 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 RAVER1Q8IY67 606 aaKnown RBP17.14■□□□□ 0.33
LIG1-204ENST00000542460 BRSK1Q8TDC3 778 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 ASB12Q8WXK4 309 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 DPH5Q9H2P9 285 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 XAB2Q9HCS7 855 aaKnown RBP17.14■□□□□ 0.33
LIG1-204ENST00000542460 PIH1D1Q9NWS0 290 aaKnown RBP17.14■□□□□ 0.33
LIG1-204ENST00000542460 WHRNQ9P202 907 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 ANAPC5Q9UJX4 755 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 R4GN57 208 aa17.14■□□□□ 0.33
LIG1-204ENST00000542460 A0A0U1RQS6 177 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 MLNP12872 115 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 NPY2RP49146 381 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 DRG2P55039 364 aaKnown RBP17.13■□□□□ 0.33
LIG1-204ENST00000542460 SLC7A5Q01650 507 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 ACOX1Q15067 660 aa17.13■□□□□ 0.33
LIG1-204ENST00000542460 AGERQ15109 404 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms