RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 USP13Q92995 863 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 CAPNS2Q96L46 248 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PGLYRP2Q96PD5 576 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PLEKHG4BQ96PX9 1271 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 SEMA3CQ99985 751 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 PIDD1Q9HB75 910 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 ZBTB26Q9HCK0 441 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 S100A14Q9HCY8 104 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 ZDHHC7Q9NXF8 308 aa9.9□□□□□ -0.82
SS18-205ENST00000542420 UBA2Q9UBT2 640 aaPredicted RBP9.9□□□□□ -0.82
SS18-205ENST00000542420 DPPA5A6NC42 116 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 A8MT66 165 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 H3BNC9 293 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 GOLGA8TH3BQL2 631 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 DCXO43602 365 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ZBTB14O43829 449 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 SMIM24O75264 130 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ABLIM3O94929 683 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ATF6P18850 670 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 SP100P23497 879 aaPredicted RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 MRPL19P49406 292 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 ATP6V0D1P61421 351 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 CYLC2Q14093 348 aaPredicted RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 DEFB115Q30KQ5 88 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ZFP1Q6P2D0 407 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 HERC6Q8IVU3 1022 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 LGI2Q8N0V4 545 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 PGAM4Q8N0Y7 254 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 PELI3Q8N2H9 469 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 TTC9BQ8N6N2 239 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 KYQ8NBH2 561 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 TXNDC5Q8NBS9 432 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 FAM81AQ8TBF8 368 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 DLG3Q92796 817 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 TOP1MTQ969P6 601 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 HERC2P3Q9BVR0 1158 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 POMKQ9H5K3 350 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 TMEM45AQ9NWC5 275 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 NMRK1Q9NWW6 199 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ZDHHC2Q9UIJ5 367 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 ZNF840PA6NDX5 716 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 H7C0S8 307 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 CD3EAPO15446 510 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 PEX1O43933 1283 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 CHRNGP07510 517 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 FGF4P08620 206 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 RFC2P35250 354 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ABCG1P45844 678 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 OXCT1P55809 520 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 DUSP4Q13115 394 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 SQLEQ14534 574 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 RBM20Q5T481 1227 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 IRAK1BP1Q5VVH5 260 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 RSPO2Q6UXX9 243 aaPredicted RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 HACD2Q6Y1H2 254 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 ARHGAP22Q7Z5H3 698 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 MIB1Q86YT6 1006 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 FBXO27Q8NI29 283 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 HDAC10Q969S8 669 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 KLHL5Q96PQ7 755 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 OR52B2Q96RD2 323 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 OLFM1Q99784 485 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 AARSD1Q9BTE6 412 aaKnown RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 CINPQ9BW66 212 aaPredicted RBP9.89□□□□□ -0.83
SS18-205ENST00000542420 CRISPLD1Q9H336 500 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 EFCAB1Q9HAE3 211 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 CREBZFQ9NS37 354 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 CATSPERZQ9NTU4 200 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 TRPM5Q9NZQ8 1165 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 BLOC1S6Q9UL45 172 aa9.89□□□□□ -0.83
SS18-205ENST00000542420 SDHDO14521 159 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 CASQ2O14958 399 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 INSIG1O15503 277 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 TBX18O95935 607 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 AVPR1AP37288 418 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 CLCN4P51793 760 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 ZNF140P52738 457 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 STC1P52823 247 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 ADARP55265 1226 aaKnown RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 TBL3Q12788 808 aaKnown RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 CUL3Q13618 768 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 CSHL1Q14406 222 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 SPATS1Q496A3 300 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 INO80DQ53TQ3 878 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 VWA5B1Q5TIE3 1220 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 EFL1Q7Z2Z2 1120 aaKnown RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 RAB44Q7Z6P3 723 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 METTL3Q86U44 580 aaKnown RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 ZNF354CQ86Y25 554 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 OR4L1Q8NH43 312 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 NR1H4Q96RI1 486 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 TSC22D3Q99576 134 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 ZNF184Q99676 751 aaPredicted RBP9.88□□□□□ -0.83
SS18-205ENST00000542420 SLX1AQ9BQ83 275 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 C1QTNF3Q9BXJ4 246 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 CCSER2Q9H7U1 834 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 SAGE1Q9NXZ1 904 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 SARDHQ9UL12 918 aa9.88□□□□□ -0.83
SS18-205ENST00000542420 ZNF232Q9UNY5 417 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms