RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CRKP46108 304 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 SERPINB10P48595 397 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 GPS1Q13098 491 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 KLF1Q13351 362 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-214ENST00000540539 SGCAQ16586 387 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 HIF1AQ16665 826 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 DGUOKQ16854 277 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 MSS51Q4VC12 460 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 VARS2Q5ST30 1063 aaKnown RBP9.5□□□□□ -0.89
CLIP1-214ENST00000540539 CCNYL2Q5T2Q4 361 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 BROXQ5VW32 411 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 ANKS3Q6ZW76 656 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 USP50Q70EL3 339 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-214ENST00000540539 NIPA1Q7RTP0 329 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF565Q8N9K5 539 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 WDR48Q8TAF3 677 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 ZFAND1Q8TCF1 268 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 SEPT8Q92599 483 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 DNAJC19Q96DA6 116 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 ZHX1-C8orf76Q96EF9 292 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 PPP1R2P1Q96PQ5 205 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 IFT46Q9NQC8 304 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 SNX15Q9NRS6 342 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 PFDN2Q9UHV9 154 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 TMPRSS11EQ9UL52 423 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 SCML1Q9UN30 329 aa9.5□□□□□ -0.89
CLIP1-214ENST00000540539 MAGED2Q9UNF1 606 aaPredicted RBP9.5□□□□□ -0.89
CLIP1-214ENST00000540539 A0A1W2PRG6 482 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SAGE2PA6NJ88 616 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PSTPIP1O43586 416 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TIPRLO75663 272 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TOM1L1O75674 476 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 FDX1P10109 184 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RALAP11233 206 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RALBP11234 206 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ENO3P13929 434 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RPS12P25398 132 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 GTF2E2P29084 291 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ALDH4A1P30038 563 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ARCN1P48444 511 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 GMPSP49915 693 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RHDQ02161 417 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SEMA3AQ14563 771 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 NFIL3Q16649 462 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PARP15Q460N3 678 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 C2CD6Q53TS8 623 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TEDDM1Q5T9Z0 273 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 NSMFQ6X4W1 530 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SPATA2LQ8IUW3 424 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TBC1D21Q8IYX1 336 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PGAM4Q8N0Y7 254 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SVOPQ8N4V2 548 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 C2orf69Q8N8R5 385 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 OR7A2PQ8NGA2 310 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 AKAP1Q92667 903 aaKnown RBP eCLIP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RAD54LQ92698 747 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 GPKOWQ92917 476 aaPredicted RBP eCLIP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SLC35C1Q96A29 364 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PPWD1Q96BP3 646 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RCN3Q96D15 328 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ZDHHC15Q96MV8 337 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 AGPAT1Q99943 283 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 BCL2L14Q9BZR8 327 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PPA2Q9H2U2 334 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 WDR41Q9HAD4 459 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 EFCAB1Q9HAE3 211 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 RANGRFQ9HD47 186 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 IARS2Q9NSE4 1012 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TMLHEQ9NVH6 421 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 EVA1BQ9NVM1 165 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PCDHGC3Q9UN70 934 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 CDK5RAP2Q96SN8 1893 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 CIB4A0PJX0 185 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 CARNS1A5YM72 827 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 OR6C65A6NJZ3 312 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ZNF487B1APH4 448 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 C9IYK1 514 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TRDMT1O14717 391 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 APOL1O14791 398 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 GPR37O15354 613 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 BMP2P12643 396 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 HOXC13P31276 330 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 HMGCLP35914 325 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ARSEP51690 589 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 VBP1P61758 197 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PLCL1Q15111 1095 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ADPRMQ3LIE5 342 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 APOBEC3HQ6NTF7 200 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 GPC2Q8N158 579 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 SFRP1Q8N474 314 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PACRGLQ8N7B6 248 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TEX47Q8TBZ9 253 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TNIP3Q96KP6 325 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 OR52B2Q96RD2 323 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 DGCR6LQ9BY27 220 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 YTHDF1Q9BYJ9 559 aaKnown RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 TINAGL1Q9GZM7 467 aaPredicted RBP9.49□□□□□ -0.89
CLIP1-214ENST00000540539 ZFP14Q9HCL3 533 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 CD320Q9NPF0 282 aa9.49□□□□□ -0.89
CLIP1-214ENST00000540539 PNPOQ9NVS9 261 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms