RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 TRBC1P01850 177 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 TUBB4AP04350 444 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 CEACAM1P13688 526 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 EPHA8P29322 1005 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 NOVA1P51513 510 aaKnown RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 PFN3P60673 137 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 SEMG2Q02383 582 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 ZNF211Q13398 564 aaPredicted RBP15.09■□□□□ 0.01
CPSF1-208ENST00000532560 LRRC14Q15048 493 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 IRF4Q15306 451 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 SHBQ15464 509 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 CNGA3Q16281 694 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 PPM1JQ5JR12 505 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 AADACL2Q6P093 401 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 HTR3CQ8WXA8 447 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 TADA1Q96BN2 335 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 IFT43Q96FT9 208 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 SCRN2Q96FV2 425 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 GLOD4Q9HC38 313 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 PCDH9Q9HC56 1237 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 LZTFL1Q9NQ48 299 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 DNPEPQ9ULA0 475 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 PYCARDQ9ULZ3 195 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 CACNA1AO00555 2505 aa15.09■□□□□ 0.01
CPSF1-208ENST00000532560 GOLGA6L9A6NEM1 432 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 PSMD11O00231 422 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 ZNF189O75820 626 aaPredicted RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 RECQL5O94762 991 aaPredicted RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 GM2AP17900 193 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 LHCGRP22888 699 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 EPHB1P54762 984 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 YPEL5P62699 121 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 KLF1Q13351 362 aaPredicted RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 SUZ12Q15022 739 aaKnown RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 WSCD2Q2TBF2 565 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 INAVAQ3KP66 663 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 PSAPL1Q6NUJ1 521 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 CDKL3Q8IVW4 592 aaPredicted RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 DEFB124Q8NES8 71 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 TRIM58Q8NG06 486 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 SAP25Q8TEE9 199 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 COQ10AQ96MF6 247 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 RBM15Q96T37 977 aaKnown RBP eCLIP15.08■□□□□ 0
CPSF1-208ENST00000532560 MBNL1Q9NR56 388 aaKnown RBP15.08■□□□□ 0
CPSF1-208ENST00000532560 KCTD5Q9NXV2 234 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 CHKBQ9Y259 395 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 CABIN1Q9Y6J0 2220 aa15.08■□□□□ 0
CPSF1-208ENST00000532560 SPTY2D1-AS1A0A0U1RR47 76 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CAPN8A6NHC0 703 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 H7C0C1 242 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 SH3BP5O60239 455 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CBFA2T3O75081 653 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ALPIP09923 528 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ZNF30P17039 623 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CTPS1P17812 591 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CD68P34810 354 aaPredicted RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 GRK6P43250 576 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ATP5OP48047 213 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 EIF3EP60228 445 aaKnown RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 IL9RQ01113 521 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ARHGEF7Q14155 803 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ACOX1Q15067 660 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 PRAMEF14Q5SWL7 426 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 SEL1L2Q5TEA6 688 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 MEI1Q5TIA1 1274 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 PARGQ86W56 976 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ZNF567Q8N184 647 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CBARPQ8N350 705 aaPredicted RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 TTC13Q8NBP0 860 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 LPCAT1Q8NF37 534 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 BAHD1Q8TBE0 780 aaPredicted RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 TRIB3Q96RU7 358 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 LYSMD1Q96S90 227 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 FERMT1Q9BQL6 677 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 ADGRE3Q9BY15 652 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 KLHL8Q9P2G9 620 aaPredicted RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 TRHDEQ9UKU6 1024 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 PCOLCE2Q9UKZ9 415 aa15.07■□□□□ 0
CPSF1-208ENST00000532560 CNOT1A5YKK6 2376 aaKnown RBP15.07■□□□□ 0
CPSF1-208ENST00000532560 A8MX80 341 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 GIPC1O14908 333 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 RBP3P10745 1247 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 NFKB1P19838 968 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 RBL1P28749 1068 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 HNF1BP35680 557 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 MTM1Q13496 603 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 PDE1CQ14123 709 aaPredicted RBP15.06■□□□□ 0
CPSF1-208ENST00000532560 PTK2BQ14289 1009 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 FZD2Q14332 565 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 RPS6KA1Q15418 735 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 TPRG1LQ5T0D9 272 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 FAM182AQ5T1J6 154 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 LRRC66Q68CR7 880 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 ESRP1Q6NXG1 681 aaKnown RBP15.06■□□□□ 0
CPSF1-208ENST00000532560 KDM7AQ6ZMT4 941 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 MACC1Q6ZN28 852 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 KANSL1Q7Z3B3 1105 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 TSPAN33Q86UF1 283 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 NUS1Q96E22 293 aa15.06■□□□□ 0
CPSF1-208ENST00000532560 DTD2Q96FN9 168 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms