RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 RBM15Q96T37 977 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS28-215ENST00000531924 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.79□□□□□ -0.04
VPS28-215ENST00000531924 TMEM63CQ9P1W3 806 aa14.79□□□□□ -0.04
VPS28-215ENST00000531924 GOLGA6CA6NDK9 693 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 GOLGA6BA6NDN3 693 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 TMEM202A6NGA9 273 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 TNFRSF10CO14798 259 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 CPP00450 1065 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 GOLGA6DP0CG33 693 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 KRT10P13645 584 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 AMPD1P23109 780 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 SERPINB6P35237 376 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 INHBCP55103 352 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 CCL7P80098 99 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 RHDQ02161 417 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 SLC10A7Q0GE19 358 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 RALGDSQ12967 914 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 EIF3IQ13347 325 aaKnown RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 BIRC2Q13490 618 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 ARHGEF7Q14155 803 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 PIGHQ14442 188 aaPredicted RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 KRT81Q14533 505 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 CAVIN1Q6NZI2 390 aaKnown RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 CCNJLQ8IV13 435 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 TMEM74Q96NL1 305 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 NAP1L5Q96NT1 182 aaPredicted RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 LRRN3Q9H3W5 708 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 DPEP2Q9H4A9 486 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 SUDS3Q9H7L9 328 aaPredicted RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 CYP4F12Q9HCS2 524 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 PHPT1Q9NRX4 125 aaPredicted RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 KCTD5Q9NXV2 234 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 GOLGA6AQ9NYA3 693 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 B4GALT6Q9UBX8 382 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 PCDHGC4Q9Y5F7 938 aa14.78□□□□□ -0.04
VPS28-215ENST00000531924 BZW2Q9Y6E2 419 aaKnown RBP14.78□□□□□ -0.04
VPS28-215ENST00000531924 A0A1B0GTH6 734 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 TTC24A2A3L6 582 aaPredicted RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 CAPN8A6NHC0 703 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 B4DGG1 531 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 D6RAR5 112 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 ERVH48-1M5A8F1 160 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 PLD2O14939 933 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 SOCS5O75159 536 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 ITGA2BP08514 1039 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 HOXC4P09017 264 aaPredicted RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 JMJD7P0C870 316 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 CYP2A6P11509 494 aaPredicted RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 GLB1P16278 677 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 VIPR1P32241 457 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 VAC14Q08AM6 782 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 NFKBIBQ15653 356 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 DPYSL2Q16555 572 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 MARC1Q5VT66 337 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 PNCKQ6P2M8 343 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 CYP4V2Q6ZWL3 525 aaPredicted RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 RAB11FIP2Q7L804 512 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 NDUFAF2Q8N183 169 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 KIAA1524Q8TCG1 905 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 NUS1Q96E22 293 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 LIN37Q96GY3 246 aaPredicted RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 NUDCD1Q96RS6 583 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 FOXP3Q9BZS1 431 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 ISCUQ9H1K1 167 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 FGF22Q9HCT0 170 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 MRPL40Q9NQ50 206 aaKnown RBP14.77□□□□□ -0.05
VPS28-215ENST00000531924 BPTFQ12830 3046 aa14.77□□□□□ -0.05
VPS28-215ENST00000531924 A0A1W2PNU3 283 aaPredicted RBP14.76□□□□□ -0.05
VPS28-215ENST00000531924 NTN3O00634 580 aaPredicted RBP14.76□□□□□ -0.05
VPS28-215ENST00000531924 TRAFD1O14545 582 aaPredicted RBP14.76□□□□□ -0.05
VPS28-215ENST00000531924 ZW10O43264 779 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 MMP13P45452 471 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 CDH6P55285 790 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 ITKQ08881 620 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 ZSCAN23Q3MJ62 389 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 C14orf28Q4W4Y0 310 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 E4F1Q66K89 784 aaPredicted RBP14.76□□□□□ -0.05
VPS28-215ENST00000531924 NYAP1Q6ZVC0 841 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 POLNQ7Z5Q5 900 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 TP53INP2Q8IXH6 220 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 CSPG4P5Q96PW8 444 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 TMEM168Q9H0V1 697 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 CARS2Q9HA77 564 aaKnown RBP14.76□□□□□ -0.05
VPS28-215ENST00000531924 NOD2Q9HC29 1040 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 HAUS2Q9NVX0 235 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 LRIT1Q9P2V4 623 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 IP6K2Q9UHH9 426 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 RABGEF1Q9UJ41 708 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 PHTF1Q9UMS5 762 aa14.76□□□□□ -0.05
VPS28-215ENST00000531924 PRSS38A1L453 326 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 PMS2P1A4D2B8 440 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CDRT15L2A8MXV6 281 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CASC3O15234 703 aaKnown RBP14.75□□□□□ -0.05
VPS28-215ENST00000531924 RARAP10276 462 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 MYCLP1P12525 358 aaPredicted RBP14.75□□□□□ -0.05
VPS28-215ENST00000531924 IL1R2P27930 398 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 UGT1A5P35504 534 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 TRIM23P36406 574 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 CFHR1Q03591 330 aa14.75□□□□□ -0.05
VPS28-215ENST00000531924 ILF3Q12906 894 aaKnown RBP eCLIP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms