RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 IKBKEQ14164 716 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 ZNF678Q5SXM1 525 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 GPR158Q5T848 1215 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 FAM45BPQ6NSW5 357 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 LAYNQ6UX15 382 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 B3GNT6Q6ZMB0 384 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 GALNT7Q86SF2 657 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 HERC6Q8IVU3 1022 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 FAM45AQ8TCE6 357 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 DUS3LQ96G46 650 aaKnown RBP19.32■□□□□ 0.68
VPS28-213ENST00000530983 NT5MQ9NPB1 228 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 CPA4Q9UI42 421 aa19.32■□□□□ 0.68
VPS28-213ENST00000530983 M0QZQ0 153 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 PAPSS2O95340 614 aaPredicted RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 MMP2P08253 660 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 ARSDP51689 593 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 MTX3Q5HYI7 312 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 PIK3R6Q5UE93 754 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 OVOS1Q6IE37 1185 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 AMIGO2Q86SJ2 522 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 ISCA2Q86U28 154 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 PIM3Q86V86 326 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 L3HYPDHQ96EM0 354 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 C3orf30Q96M34 536 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 UHRF1Q96T88 793 aaPredicted RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 SLC39A3Q9BRY0 314 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 TRMOQ9BU70 441 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 DMTF1Q9Y222 760 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 SNX13Q9Y5W8 968 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 WASH4PA8MWX3 477 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 J3KR12 359 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 TRPA1O75762 1119 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 SUPT7LO94864 414 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 S1PR4O95977 384 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 ALDOCP09972 364 aaKnown RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 SLC7A1P30825 629 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 MLLT6P55198 1093 aaPredicted RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 TXNL4AP83876 142 aaKnown RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 NRG1Q02297 640 aaPredicted RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 SLC10A7Q0GE19 358 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 HMBOX1Q6NT76 420 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 FUNDC1Q8IVP5 155 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 KLHL5Q96PQ7 755 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 MARCH4Q9P2E8 410 aaPredicted RBP19.31■□□□□ 0.68
VPS28-213ENST00000530983 CROTQ9UKG9 612 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 PADI4Q9UM07 663 aa19.31■□□□□ 0.68
VPS28-213ENST00000530983 hCG_2014768A0A024R1R8 64 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 MYADML2A6NDP7 307 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 CCDC160A6NGH7 325 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 MROH6A6NGR9 719 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 GLTPD2A6NH11 291 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 SRP72O76094 671 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 ITGB1P05556 798 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 RENBPP51606 427 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 ITKQ08881 620 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 UGT3A2Q3SY77 523 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 TMEM259Q4ZIN3 620 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 SAMD4BQ5PRF9 694 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 HACD2Q6Y1H2 254 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 TFAP2DQ7Z6R9 452 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 MRPL10Q7Z7H8 261 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 GABPB2Q8TAK5 448 aaPredicted RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 DDI1Q8WTU0 396 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 SLC29A1Q99808 456 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 AGO3Q9H9G7 860 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 GMPR2Q9P2T1 348 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 A0A1W2PQH9 124 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 TTC24A2A3L6 582 aaPredicted RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 OR51F1A6NGY5 319 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 SLC7A4O43246 635 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 HAPLN1P10915 354 aaPredicted RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 GRIK1P39086 918 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 ACADVLP49748 655 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 NR1H2P55055 460 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 HPCAP84074 193 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 DSC2Q02487 901 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 UNC50Q53HI1 259 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 CARM1Q86X55 608 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 UMODL1-AS1Q8N2C9 162 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 OR6P1Q8NGX9 317 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 RIN3Q8TB24 985 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 RSPH1Q8WYR4 309 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 HDAC10Q969S8 669 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 PTERQ96BW5 349 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 C19orf60Q96EN9 201 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 HMCESQ96FZ2 354 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 MFSD1Q9H3U5 465 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 VPS45Q9NRW7 570 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 CNOT6Q9ULM6 557 aaKnown RBP19.3■□□□□ 0.68
VPS28-213ENST00000530983 CLEC11AQ9Y240 323 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 Q9Y3F1 56 aa19.3■□□□□ 0.68
VPS28-213ENST00000530983 F8W810 466 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 ATP4BP51164 291 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 SLC7A2P52569 658 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 FKBP1BP68106 108 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 MAPRE1Q15691 268 aaKnown RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 RETREG3Q86VR2 466 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 CIB1Q99828 191 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 OSBPL11Q9BXB4 747 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 DDX18Q9NVP1 670 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms