RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SLC35F3	Q8IY50	421 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	ZCCHC9	Q8N567	271 aa	Known RBP	4.74	□□□□□ -1.65
CD44-223	ENST00000526553	TSPYL6	Q8N831	410 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	SKA1	Q96BD8	255 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	BICD1	Q96G01	975 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	IGSF21	Q96ID5	467 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	ZNF385A	Q96PM9	386 aa	Known RBP	4.74	□□□□□ -1.65
CD44-223	ENST00000526553	SLITRK1	Q96PX8	696 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	AGXT2	Q9BYV1	514 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	GLIS2	Q9BZE0	524 aa	Predicted RBP	4.74	□□□□□ -1.65
CD44-223	ENST00000526553	BRF2	Q9HAW0	419 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	BPIFA1	Q9NP55	256 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	SLC9A2	Q9UBY0	812 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	TMEM98	Q9Y2Y6	226 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	STON1	Q9Y6Q2	735 aa		4.74	□□□□□ -1.65
CD44-223	ENST00000526553	ATXN2	Q99700	1313 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	TTC36	A6NLP5	189 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	TNFSF14	O43557	240 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	NDUFS7	O75251	213 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	SNRNP70	P08621	437 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	STX2	P32856	288 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	SHMT1	P34896	483 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	TUB	P50607	506 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	ERVFC1-1	P60608	527 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	EEF1A2	Q05639	463 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	SF3B4	Q15427	424 aa	Known RBP eCLIP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	OASL	Q15646	514 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	MMEL1	Q495T6	779 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	ATP13A5	Q4VNC0	1218 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	FAM69A	Q5T7M9	428 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	INO80C	Q6PI98	192 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	HEATR4	Q86WZ0	1026 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	TDRP	Q86YL5	185 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	PAIP1	Q9H074	479 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	ESRP2	Q9H6T0	727 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	C17orf75	Q9HAS0	396 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	MKKS	Q9NPJ1	570 aa	Predicted RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	SMARCAL1	Q9NZC9	954 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	ARHGAP26	Q9UNA1	814 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	LSM4	Q9Y4Z0	139 aa	Known RBP	4.73	□□□□□ -1.65
CD44-223	ENST00000526553	DOCK7	Q96N67	2140 aa		4.73	□□□□□ -1.65
CD44-223	ENST00000526553	MAGEA13P	A6NCF6	341 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	TMEM202	A6NGA9	273 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553		J3KRW8	73 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	DDX5	P17844	614 aa	Known RBP	4.72	□□□□□ -1.65
CD44-223	ENST00000526553	CPOX	P36551	454 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	POU3F1	Q03052	451 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-223	ENST00000526553	PLEKHA7	Q6IQ23	1121 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	ANKRD54	Q6NXT1	300 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	FAM122C	Q6P4D5	195 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	LCTL	Q6UWM7	567 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	B3GNT6	Q6ZMB0	384 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	SLC46A3	Q7Z3Q1	461 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	ARMC8	Q8IUR7	673 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	ZBTB2	Q8N680	514 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	HUS1B	Q8NHY5	278 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	CREB3L4	Q8TEY5	395 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	SAAL1	Q96ER3	474 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	NR1H4	Q96RI1	486 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-223	ENST00000526553	HAUS8	Q9BT25	410 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	SLC25A18	Q9H1K4	315 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	UBN1	Q9NPG3	1134 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	NOX4	Q9NPH5	578 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	MAP3K20	Q9NYL2	800 aa	Known RBP	4.72	□□□□□ -1.65
CD44-223	ENST00000526553	ZNF224	Q9NZL3	707 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553	FBXO9	Q9UK97	447 aa	Predicted RBP	4.72	□□□□□ -1.65
CD44-223	ENST00000526553	UTY	O14607	1347 aa		4.72	□□□□□ -1.65
CD44-223	ENST00000526553		A6NLC8	198 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	USP17L23	D6RBM5	183 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SEC14L5	O43304	696 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	PLRG1	O43660	514 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	RFPL2	O75678	378 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	PMS2P2	O95744	297 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	HSP90AA1	P07900	732 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	LINC00271	P0C7V0	271 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SRC	P12931	536 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	MAOA	P21397	527 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	CDA	P32320	146 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	GNAQ	P50148	359 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	EIF3B	P55884	814 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	GEMIN4	P57678	1058 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	NEXN	Q0ZGT2	675 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SIM2	Q14190	667 aa	Predicted RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	HYI	Q5T013	277 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	WBP2NL	Q6ICG8	309 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	ACAD10	Q6JQN1	1059 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	FBXO46	Q6PJ61	603 aa	Predicted RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	CADM4	Q8NFZ8	388 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	WFIKKN2	Q8TEU8	576 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	LMLN	Q96KR4	655 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SEC62	Q99442	399 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	FAM110A	Q9BQ89	295 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	EIF2AK1	Q9BQI3	630 aa	Known RBP	4.71	□□□□□ -1.66
CD44-223	ENST00000526553	KRTAP2-2	Q9BYT5	123 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	JMJD4	Q9H9V9	463 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	CNGB3	Q9NQW8	809 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	PLSCR4	Q9NRQ2	329 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	SIX4	Q9UIU6	781 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	KCNG2	Q9UJ96	466 aa		4.71	□□□□□ -1.66
CD44-223	ENST00000526553	RCOR1	Q9UKL0	485 aa		4.71	□□□□□ -1.66

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