RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ARPP21Q9UBL0 812 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 COL16A1Q07092 1604 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 TONSLQ96HA7 1378 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ADGRB2O60241 1585 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 OR6C68A6NDL8 312 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 AGAP14A8MT82 685 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 B8ZZF3 427 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 DDX39AO00148 427 aaKnown RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 USP12O75317 370 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PROP1O75360 226 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 GJB3O75712 270 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TSPAN9O75954 239 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 BEST1O76090 585 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 CYP2A6P11509 494 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 LAMP2P13473 410 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 GAP43P17677 238 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 HOXA7P31268 230 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 MLH1P40692 756 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 EFNB1P98172 346 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 LRMPQ12912 555 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 CHAF1BQ13112 559 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 COG2Q14746 738 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TBCEQ15813 527 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 ADIPOQQ15848 244 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TMEM266Q2M3C6 531 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ZNF674Q2M3X9 581 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ZXDCQ2QGD7 858 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 SUMO4Q6EEV6 95 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 WDR73Q6P4I2 378 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PCSK4Q6UW60 755 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 CPLX4Q7Z7G2 160 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 AMIGO2Q86SJ2 522 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 MRGPRGQ86SM5 289 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TMCO5AQ8N6Q1 288 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 SCAIQ8N9R8 606 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ETNPPLQ8TBG4 499 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 BCAS4Q8TDM0 211 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PIGOQ8TEQ8 1089 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 HSPH1Q92598 858 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PIGKQ92643 395 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 KAT2BQ92831 832 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ARHGEF2Q92974 986 aaKnown RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 CUL5Q93034 780 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 C16orf45Q96MC5 204 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 PAIP2Q9BPZ3 127 aaKnown RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 LBHD1Q9BQE6 289 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 ACAT2Q9BWD1 397 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TEX13BQ9BXU2 312 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 FRMD8Q9BZ67 464 aaPredicted RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.92□□□□□ -1.62
CD44-220ENST00000525688 RABEP2Q9H5N1 569 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ERVMER34-1Q9H9K5 563 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 BRF2Q9HAW0 419 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ASB6Q9NWX5 421 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ADPRHL2Q9NX46 363 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 MCM9Q9NXL9 1143 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 FBXO40Q9UH90 709 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TNFSF13BQ9Y275 285 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PSAT1Q9Y617 370 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 NHSL1Q5SYE7 1610 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 TRPM1Q7Z4N2 1603 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 PHLPP1O60346 1717 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 ARHGEF28Q8N1W1 1705 aaKnown RBP4.92□□□□□ -1.62
CD44-220ENST00000525688 FMN2Q9NZ56 1722 aa4.92□□□□□ -1.62
CD44-220ENST00000525688 KRTAP9-6A0A140TA67 174 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 NPIPB15A6NHN6 443 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 KRTAP9-7A8MTY7 169 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 AKR1B15C9JRZ8 316 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 TXNL1O43396 289 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 STRNO43815 780 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 SNX4O95219 450 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 SLU7O95391 586 aaKnown RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 PLAUP00749 431 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 NHLRC4P0CG21 123 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 FCGR2AP12318 317 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 TFEBP19484 476 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 MAPK3P27361 379 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 BSGP35613 385 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 RGS2P41220 211 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 HARS2P49590 506 aaKnown RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 BLKP51451 505 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 MC1RQ01726 317 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 KLHL30Q0D2K2 578 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 RPE65Q16518 533 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ZNF667Q5HYK9 610 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 KIAA1755Q5JYT7 1200 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 PRAMEF17Q5VTA0 474 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 DCLRE1AQ6PJP8 1040 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ZNF813Q6ZN06 617 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 PXKQ7Z7A4 578 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 CPXM2Q8N436 756 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 PLD5Q8N7P1 536 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ZFAND2BQ8WV99 257 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 IP6K1Q92551 441 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 ZNF75CPQ92670 426 aaPredicted RBP4.91□□□□□ -1.62
CD44-220ENST00000525688 PTP4A1Q93096 173 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 EXOC4Q96A65 974 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 SAAL1Q96ER3 474 aa4.91□□□□□ -1.62
CD44-220ENST00000525688 CALML4Q96GE6 196 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms