RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 FAM71BQ8TC56 605 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PDCD6IPQ8WUM4 868 aaKnown RBP17.54■□□□□ 0.4
DDX41-217ENST00000515562 RBM15Q96T37 977 aaKnown RBP eCLIP17.54■□□□□ 0.43e-7■□□□□ 10.7
DDX41-217ENST00000515562 CCDC3Q9BQI4 270 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 WDR26Q9H7D7 661 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 NOD2Q9HC29 1040 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 UVRAGQ9P2Y5 699 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PADI4Q9UM07 663 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 NENFQ9UMX5 172 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PCDHGC4Q9Y5F7 938 aa17.54■□□□□ 0.4
DDX41-217ENST00000515562 PDE2AO00408 941 aaPredicted RBP17.53■□□□□ 0.4
DDX41-217ENST00000515562 TNFRSF10CO14798 259 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 TNFP01375 233 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 VIPR1P32241 457 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 TRIM23P36406 574 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 PCBP4P57723 403 aaKnown RBP17.53■□□□□ 0.4
DDX41-217ENST00000515562 KYQ8NBH2 561 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 OR6C4Q8NGE1 309 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 CTNNBL1Q8WYA6 563 aaPredicted RBP17.53■□□□□ 0.4
DDX41-217ENST00000515562 FUBP1Q96AE4 644 aaKnown RBP17.53■□□□□ 0.4
DDX41-217ENST00000515562 NUS1Q96E22 293 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 COQ10AQ96MF6 247 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 NSMCE3Q96MG7 304 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 ZNF670Q9BS34 389 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 HAUS2Q9NVX0 235 aa17.53■□□□□ 0.4
DDX41-217ENST00000515562 SHROOM3Q8TF72 1996 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 TTC24A2A3L6 582 aaPredicted RBP17.52■□□□□ 0.4
DDX41-217ENST00000515562 PSMD11O00231 422 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 MFSD11O43934 449 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 CYP2A6P11509 494 aaPredicted RBP17.52■□□□□ 0.4
DDX41-217ENST00000515562 GM2AP17900 193 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 ITPKBP27987 946 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 ERVPABLB-1P60509 514 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 MAXP61244 160 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 TRAF2Q12933 501 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 TRIM14Q14142 442 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 SPIDRQ14159 915 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 TCEA2Q15560 299 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 CNGA3Q16281 694 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 SLC18A3Q16572 532 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 TSR1Q2NL82 804 aaKnown RBP17.52■□□□□ 0.4
DDX41-217ENST00000515562 TIGD7Q6NT04 549 aaPredicted RBP17.52■□□□□ 0.4
DDX41-217ENST00000515562 PNCKQ6P2M8 343 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 IGF2-ASQ6U949 168 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 CRTC1Q6UUV9 634 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 USP45Q70EL2 814 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 ZNF248Q8NDW4 579 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 OR1E3Q8WZA6 343 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 LGMNQ99538 433 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 XPO4Q9C0E2 1151 aaKnown RBP17.52■□□□□ 0.4
DDX41-217ENST00000515562 FGF22Q9HCT0 170 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 THSD1Q9NS62 852 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 SIRPGQ9P1W8 387 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 CTTNBP2NLQ9P2B4 639 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 GULP1Q9UBP9 304 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 PHTF1Q9UMS5 762 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 GPR34Q9UPC5 381 aa17.52■□□□□ 0.4
DDX41-217ENST00000515562 ASXL3Q9C0F0 2248 aa17.52■□□□□ 0.39
DDX41-217ENST00000515562 TMEM202A6NGA9 273 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 A8MX80 341 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 CBFA2T2O43439 604 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 PROSCO94903 275 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 HEXIM1O94992 359 aaKnown RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 PGLSO95336 258 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 KRT7P08729 469 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 CD48P09326 243 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 H2AFZP0C0S5 128 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 MYCLP1P12525 358 aaPredicted RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 KRT10P13645 584 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 HOXB3P14651 431 aaPredicted RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 IL4RP24394 825 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 GJC1P36383 396 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 GARSP41250 739 aaKnown RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 ARSEP51690 589 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 GALNT2Q10471 571 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 MMRN1Q13201 1228 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 DPYSL3Q14195 570 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 PDK2Q15119 407 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 C3orf38Q5JPI3 329 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 ARMC12Q5T9G4 340 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 NCBP2-AS2Q69YL0 99 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 SPECC1LQ69YQ0 1117 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 H2AFVQ71UI9 128 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 MAP7D3Q8IWC1 876 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 TEX26Q8N6G2 289 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 ATXN7L3BQ96GX2 97 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 HIC2Q96JB3 615 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 MCCC1Q96RQ3 725 aaPredicted RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 POLR1EQ9GZS1 481 aaKnown RBP17.51■□□□□ 0.39
DDX41-217ENST00000515562 SYNDIG1Q9H7V2 258 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 NT5MQ9NPB1 228 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 SATB2Q9UPW6 733 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 ENTPD2Q9Y5L3 495 aa17.51■□□□□ 0.39
DDX41-217ENST00000515562 LHCGRP22888 699 aa17.5■□□□□ 0.39
DDX41-217ENST00000515562 CCDC173Q0VFZ6 552 aa17.5■□□□□ 0.39
DDX41-217ENST00000515562 ARHGEF7Q14155 803 aa17.5■□□□□ 0.39
DDX41-217ENST00000515562 PAFAH1B3Q15102 231 aaKnown RBP17.5■□□□□ 0.39
DDX41-217ENST00000515562 SKOR2Q2VWA4 1001 aaPredicted RBP17.5■□□□□ 0.39
DDX41-217ENST00000515562 KCTD16Q68DU8 428 aa17.5■□□□□ 0.39
DDX41-217ENST00000515562 NDUFAF2Q8N183 169 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms