RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 IHHQ14623 411 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 CUZD1Q86UP6 607 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 CIR1Q86X95 450 aaPredicted RBP14.89□□□□□ -0.03
NUP54-217ENST00000514987 DBF4BQ8NFT6 615 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 OR4L1Q8NH43 312 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 BLOC1S5Q8TDH9 187 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 DLG3Q92796 817 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 CCDC124Q96CT7 223 aaKnown RBP14.89□□□□□ -0.03
NUP54-217ENST00000514987 RCN3Q96D15 328 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 TBATAQ96M53 351 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 KLHL4Q9C0H6 718 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 NACA2Q9H009 215 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 CRISPLD1Q9H336 500 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 WDR41Q9HAD4 459 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 SYTL2Q9HCH5 934 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 SPATS2LQ9NUQ6 558 aaKnown RBP14.89□□□□□ -0.03
NUP54-217ENST00000514987 MARCH4Q9P2E8 410 aaPredicted RBP14.89□□□□□ -0.03
NUP54-217ENST00000514987 UBA2Q9UBT2 640 aaPredicted RBP14.89□□□□□ -0.03
NUP54-217ENST00000514987 VPS9D1Q9Y2B5 631 aa14.89□□□□□ -0.03
NUP54-217ENST00000514987 CCDC189A1A4V9 331 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 CCDC162PA2VCL2 907 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 PITPNM1O00562 1244 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 CASQ2O14958 399 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 PFDN6O15212 129 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 NBNO60934 754 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 OXCT1P55809 520 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 HERVK_113P63132 956 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 TYSND1Q2T9J0 566 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 PIGGQ5H8A4 983 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 RTP2Q5QGT7 225 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 TCHHL1Q5QJ38 904 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 ZNF678Q5SXM1 525 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 HECTD3Q5T447 861 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 IL31Q6EBC2 164 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 SLC8B1Q6J4K2 584 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 TMEM154Q6P9G4 183 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 RSPO2Q6UXX9 243 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 CHST9Q7L1S5 443 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 ISCA2Q86U28 154 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 GIPC2Q8TF65 315 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 PYDC1Q8WXC3 89 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 MOCOSQ96EN8 888 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 PPP1R36Q96LQ0 422 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 TRIB3Q96RU7 358 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 CDRT15Q96T59 188 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 DDX50Q9BQ39 737 aaKnown RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 LBHD1Q9BQE6 289 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 CINPQ9BW66 212 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 ERVK-6Q9BXR3 956 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 GSTO2Q9H4Y5 243 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 TFB2MQ9H5Q4 396 aaKnown RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 CYP4F12Q9HCS2 524 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 NLE1Q9NVX2 485 aaPredicted RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 HSFX1Q9UBD0 423 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 G3BP2Q9UN86 482 aaKnown RBP14.88□□□□□ -0.03
NUP54-217ENST00000514987 TRAF6Q9Y4K3 522 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 BACE2Q9Y5Z0 518 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 CHD5Q8TDI0 1954 aa14.88□□□□□ -0.03
NUP54-217ENST00000514987 ILVBLA1L0T0 632 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 NEMP2A6NFY4 417 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 UBDO15205 165 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 GPC4O75487 556 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 JUNP05412 331 aaKnown RBP14.87□□□□□ -0.03
NUP54-217ENST00000514987 HNRNPLP14866 589 aaKnown RBP eCLIP14.87□□□□□ -0.03
NUP54-217ENST00000514987 ME2P23368 584 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 HOXD9P28356 352 aaPredicted RBP14.87□□□□□ -0.03
NUP54-217ENST00000514987 PMLP29590 882 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 STC1P52823 247 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 CDC16Q13042 620 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 PEX6Q13608 980 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 TAF1AQ15573 450 aaPredicted RBP14.87□□□□□ -0.03
NUP54-217ENST00000514987 ZNF423Q2M1K9 1284 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 GPR158Q5T848 1215 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 AFTPHQ6ULP2 937 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 PDSS2Q86YH6 399 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 KBTBD2Q8IY47 623 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 SLAIN1Q8ND83 568 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 CATSPER1Q8NEC5 780 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 ANKRD49Q8WVL7 239 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 GATA6Q92908 595 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 DNAJC1Q96KC8 554 aaKnown RBP14.87□□□□□ -0.03
NUP54-217ENST00000514987 B3GALT6Q96L58 329 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 AARSD1Q9BTE6 412 aaKnown RBP14.87□□□□□ -0.03
NUP54-217ENST00000514987 ALG9Q9H6U8 611 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 ACSS2Q9NR19 701 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 MTRRQ9UBK8 725 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 PSMD13Q9UNM6 376 aa14.87□□□□□ -0.03
NUP54-217ENST00000514987 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.86□□□□□ -0.03
NUP54-217ENST00000514987 TTC24A2A3L6 582 aaPredicted RBP14.86□□□□□ -0.03
NUP54-217ENST00000514987 TCAF2A6NFQ2 919 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 C2orf81A6NN90 581 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 MUSKO15146 869 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 INSIG1O15503 277 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 TRPA1O75762 1119 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 INHAP05111 366 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 CD1DP15813 335 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 ATF6P18850 670 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 KCNA5P22460 613 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 PSMD8P48556 350 aa14.86□□□□□ -0.03
NUP54-217ENST00000514987 KCNQ1P51787 676 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms