RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 NRROSQ86YC3 692 aa20.39■□□□□ 0.85
SQSTM1-215ENST00000514093 ELOA2Q8IYF1 753 aaPredicted RBP20.39■□□□□ 0.85
SQSTM1-215ENST00000514093 JOSD2Q8TAC2 188 aa20.39■□□□□ 0.85
SQSTM1-215ENST00000514093 ABHD17AQ96GS6 310 aa20.39■□□□□ 0.85
SQSTM1-215ENST00000514093 PRSS38A1L453 326 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 RASA4BC9J798 803 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 TNFRSF10CO14798 259 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 RASA4O43374 803 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 MMEP08473 750 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 CCNB1P14635 433 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 KELP23276 732 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 AK4P27144 223 aaPredicted RBP20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 SDC4P31431 198 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 LIMK2P53671 638 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 RALGDSQ12967 914 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 DPY19L2P1Q6NXN4 242 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 ARCQ7LC44 396 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 ZNF438Q7Z4V0 828 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 NOP9Q86U38 636 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 CATSPER2Q96P56 530 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 CARS2Q9HA77 564 aaKnown RBP20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 LRRC4CQ9HCJ2 640 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 TMEM9Q9P0T7 183 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 TAAR2Q9P1P5 351 aa20.38■□□□□ 0.85
SQSTM1-215ENST00000514093 GM2AP17900 193 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 EPHB2P29323 1055 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 CSTF2P33240 577 aaKnown RBP eCLIP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 TRIM23P36406 574 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 MTIF2P46199 727 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 HDAC4P56524 1084 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 NOMO3P69849 1222 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 BIRC2Q13490 618 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 ANKS6Q68DC2 871 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 BRAT1Q6PJG6 821 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 LIPIQ6XZB0 460 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 FAM129CQ86XR2 697 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 NRSN1Q8IZ57 195 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 UNC5BQ8IZJ1 945 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 RTL3Q8N8U3 475 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 MSANTD4Q8NCY6 345 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 AGBL5Q8NDL9 886 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 ZNF641Q96N77 438 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 WDR26Q9H7D7 661 aa20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 UBA2Q9UBT2 640 aaPredicted RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 SPTAN1Q13813 2472 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 SPENQ96T58 3664 aaKnown RBP20.37■□□□□ 0.85
SQSTM1-215ENST00000514093 EFCAB7A8K855 629 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 MTSS1O43312 755 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 LSM8O95777 96 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 FUCA1P04066 466 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 ELFN1P0C7U0 828 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 CSF2RBP32927 897 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 STAT1P42224 750 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 RGRP47804 291 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 NR1D2Q14995 579 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 DEFB109BQ30KR1 87 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 PNCKQ6P2M8 343 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 CCDC112Q8NEF3 446 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 FAM172AQ8WUF8 416 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 PTCD2Q8WV60 388 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 SLC45A3Q96JT2 553 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 DDA1Q9BW61 102 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 GPN2Q9H9Y4 310 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 RWDD2AQ9UIY3 292 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 FHOD1Q9Y613 1164 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 NOTCH2Q04721 2471 aa20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 USP9XQ93008 2570 aaPredicted RBP20.36■□□□□ 0.85
SQSTM1-215ENST00000514093 LOC101059948A0A1B0GTJ6 334 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 C2CD4BA6NLJ0 364 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 J3KR12 359 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 PPM1DO15297 605 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 HOXC4P09017 264 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 THRAP10827 490 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 CDC20Q12834 499 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 TRA2AQ13595 282 aaKnown RBP eCLIP20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 GRM3Q14832 879 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 CLPPQ16740 277 aaPredicted RBP20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 TSR1Q2NL82 804 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 DCAF12Q5T6F0 453 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 SLC30A9Q6PML9 568 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 STRADAQ7RTN6 431 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 OR4D9Q8NGE8 314 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 MIB2Q96AX9 1013 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 CTRCQ99895 268 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 GSDMCQ9BYG8 508 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 ASPSCR1Q9BZE9 553 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 PILRAQ9UKJ1 303 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 ST14Q9Y5Y6 855 aa20.35■□□□□ 0.85
SQSTM1-215ENST00000514093 ZW10O43264 779 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 CREB3O43889 395 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 NR1D1P20393 614 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 OAS2P29728 719 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 GNPDA1P46926 289 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 MLLT10P55197 1068 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 YBEYP58557 167 aaPredicted RBP20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 ILF3Q12906 894 aaKnown RBP eCLIP20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 ACOX1Q15067 660 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 ATP1A1-AS1Q5TC04 95 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 SMYD5Q6GMV2 418 aa20.34■□□□□ 0.85
SQSTM1-215ENST00000514093 SLFN11Q7Z7L1 901 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms