RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 TOR1BO14657 336 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 NBNO60934 754 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 NUMBP49757 651 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ADIGQ0VDE8 80 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PCID2Q5JVF3 399 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 REP15Q6BDI9 236 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 P2RY8Q86VZ1 359 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 RAB43Q86YS6 212 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CLYBLQ8N0X4 340 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 OR56A4Q8NGH8 313 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ADAM32Q8TC27 787 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 LRRN4Q8WUT4 740 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 RGS18Q9NS28 235 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TRAF6Q9Y4K3 522 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 BCLAF3A2AJT9 711 aaKnown RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 MAGEB3O15480 346 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PLA2G6O60733 806 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 YBX3P16989 372 aaKnown RBP eCLIP11.28□□□□□ -0.69e-6■□□□□ 10.4
TCOF1-211ENST00000513346 GM2AP17900 193 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TALDO1P37837 337 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PHC1P78364 1004 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 MAD2L1Q13257 205 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 EML3Q32P44 896 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 SLC9B1Q4ZJI4 515 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF57Q68EA5 555 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF544Q6NX49 715 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 DNAJC14Q6Y2X3 702 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PLEKHM3Q6ZWE6 761 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 NEK10Q6ZWH5 1172 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 SLC2A14Q8TDB8 520 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 OTULINQ96BN8 352 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PGLYRP2Q96PD5 576 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CCDC106Q9BWC9 280 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PCDHAC1Q9H158 963 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 SDCBP2Q9H190 292 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 EPB41L4BQ9H329 900 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 FBXO44Q9H4M3 255 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ALG9Q9H6U8 611 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 KRT84Q9NSB2 600 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 RNF19AQ9NV58 838 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 WWOXQ9NZC7 414 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 MAGEL2Q9UJ55 1249 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 KIAA0100Q14667 2235 aaKnown RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 C2orf81A6NN90 581 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 LOC110117498-PIK3R3F6TDL0 507 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 FAM189A1O60320 539 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ENDOD1O94919 500 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 RRM2P31350 389 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CCR1P32246 355 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 STT3AP46977 705 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PSMD5Q16401 504 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 NEK5Q6P3R8 708 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 KIAA0319LQ8IZA0 1049 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CARNMT1Q8N4J0 409 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 SLAIN1Q8ND83 568 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TRMOQ9BU70 441 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 APOL5Q9BWW9 433 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 HDHD2Q9H0R4 259 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TLR8Q9NR97 1041 aaKnown RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 VPS28Q9UK41 221 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PDE10AQ9Y233 779 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ANKRD33BA6NCL7 494 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 PEX10O60683 326 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 NDUFS2O75306 463 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 CLPXO76031 633 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 SERPIND1P05546 499 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 RHOCP08134 193 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 COL6A2P12110 1019 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF37AP17032 561 aaPredicted RBP11.27□□□□□ -0.6
TCOF1-211ENST00000513346 TBC1D25Q3MII6 688 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 OGFOD2Q6N063 350 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 GATAD2AQ86YP4 633 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 TBC1D19Q8N5T2 526 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 GLIS1Q8NBF1 620 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 METTL6Q8TCB7 284 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 PRICKLE1Q96MT3 831 aaPredicted RBP11.27□□□□□ -0.6
TCOF1-211ENST00000513346 MRPL9Q9BYD2 267 aaKnown RBP11.27□□□□□ -0.6
TCOF1-211ENST00000513346 RHOJQ9H4E5 214 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 REEP1Q9H902 201 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 TBC1D30Q9Y2I9 924 aa11.27□□□□□ -0.6
TCOF1-211ENST00000513346 SPATA31C2B4DYI2 1134 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 TFECO14948 347 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-211ENST00000513346 DNAJA2O60884 412 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 IDO1P14902 403 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 HOXB8P17481 243 aaPredicted RBP11.27□□□□□ -0.61
TCOF1-211ENST00000513346 MAPK1P28482 360 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 GRK4P32298 578 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 PRIM2P49643 509 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 ITGA1P56199 1179 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 CAPSQ13938 189 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 TSNQ15631 228 aaKnown RBP11.27□□□□□ -0.61
TCOF1-211ENST00000513346 SLC9A4Q6AI14 798 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 PPP4R4Q6NUP7 873 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 TRMT10BQ6PF06 316 aaKnown RBP11.27□□□□□ -0.61
TCOF1-211ENST00000513346 ZYG11AQ6WRX3 759 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 CUZD1Q86UP6 607 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 PLD5Q8N7P1 536 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 SMARCD1Q96GM5 515 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 TBL1YQ9BQ87 522 aa11.27□□□□□ -0.61
TCOF1-211ENST00000513346 RBM22Q9NW64 420 aaKnown RBP eCLIP11.27□□□□□ -0.614e-6■■■■□ 24.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms