RNA–Protein interactions for RNA: ENST00000510171.3

DDX41-211, Transcript of DEAD-box helicase 41, human

TSL 3

Gene DDX41, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-211	ENST00000510171	SOX5	P35711	763 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	STAT1	P42224	750 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	NSF	P46459	744 aa	Known RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	CSNK1D	P48730	415 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	ATP1A2	P50993	1020 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	NDST2	P52849	883 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	GSC	P56915	257 aa	Predicted RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	OR1D5	P58170	312 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	POLR2L	P62875	67 aa	Known RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	SRSF1	Q07955	248 aa	Known RBP eCLIP	10.45	□□□□□ -0.74	2e-6	■□□□□ 8.3
DDX41-211	ENST00000510171	RALGDS	Q12967	914 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	PTP4A2	Q12974	167 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	C16orf72	Q14CZ0	275 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	KRT31	Q15323	416 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	CLPP	Q16740	277 aa	Predicted RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	AFMID	Q63HM1	303 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	PNCK	Q6P2M8	343 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	SASS6	Q6UVJ0	657 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	LIPI	Q6XZB0	460 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	SRL	Q86TD4	932 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	HTR3C	Q8WXA8	447 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	JPH3	Q8WXH2	748 aa	Predicted RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	TAAR9	Q96RI9	348 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	FUCA2	Q9BTY2	467 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	LGR4	Q9BXB1	951 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	VPS16	Q9H269	839 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	ADNP	Q9H2P0	1102 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	LRRC19	Q9H756	370 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	WDR26	Q9H7D7	661 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	PDF	Q9HBH1	243 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	RDH14	Q9HBH5	336 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	SPATS2L	Q9NUQ6	558 aa	Known RBP	10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	ANO10	Q9NW15	660 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	FZD10	Q9ULW2	581 aa		10.45	□□□□□ -0.74
DDX41-211	ENST00000510171	ANKRD62	A6NC57	917 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	HGS	O14964	777 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	TEX33	O43247	280 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	PALM	O75781	387 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	FGF1	P05230	155 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	CALB1	P05937	261 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	CCNB1	P14635	433 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	HTR7	P34969	479 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	RGR	P47804	291 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	PAPOLA	P51003	745 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	ZNF143	P52747	638 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	AIF1	P55008	147 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	MAZ	P56270	477 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	POLR2F	P61218	127 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	TLE1	Q04724	770 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	BCL2L1	Q07817	233 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	BIRC2	Q13490	618 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	STX1A	Q16623	288 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	BORA	Q6PGQ7	559 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	ZNF438	Q7Z4V0	828 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	C17orf82	Q86X59	251 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	PHF13	Q86YI8	300 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	TSEN2	Q8NCE0	465 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	C3orf20	Q8ND61	904 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	GPBAR1	Q8TDU6	330 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	ZDHHC1	Q8WTX9	485 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	NKD1	Q969G9	470 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	ECHDC3	Q96DC8	303 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	CELF6	Q96J87	481 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	PCDHB18P	Q96TA0	734 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	SLC12A9	Q9BXP2	914 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	GSDMC	Q9BYG8	508 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	GAN	Q9H2C0	597 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	CARS2	Q9HA77	564 aa	Known RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	FAM207A	Q9NSI2	230 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	FANCL	Q9NW38	375 aa		10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	COL27A1	Q8IZC6	1860 aa	Predicted RBP	10.44	□□□□□ -0.74
DDX41-211	ENST00000510171	IGHV5-10-1	A0A0J9YXX1	117 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	PRSS38	A1L453	326 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	ARHGAP42	A6NI28	874 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171		A8MX80	341 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CCP110	O43303	1012 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	ECEL1	O95672	775 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	MBD3	O95983	291 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	FGF3	P11487	239 aa	Predicted RBP	10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	DES	P17661	470 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CD1C	P29017	333 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	GPR3	P46089	330 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	JAM2	P57087	298 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	TPI1	P60174	286 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	MYL5	Q02045	173 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	NSUN2	Q08J23	767 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	ILF3	Q12906	894 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	TRA2A	Q13595	282 aa	Known RBP eCLIP	10.43	□□□□□ -0.74	1e-6	■□□□□ 9.3
DDX41-211	ENST00000510171	ACOX1	Q15067	660 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CLEC16A	Q2KHT3	1053 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	DNAJC24	Q6P3W2	148 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	DPPA4	Q7L190	304 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	PTRH1	Q86Y79	214 aa	Known RBP	10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	IL22RA1	Q8N6P7	574 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	RCBTB1	Q8NDN9	531 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	ZNF564	Q8TBZ8	553 aa	Predicted RBP	10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CCDC74B	Q96LY2	380 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	NUDT22	Q9BRQ3	303 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CNPY3	Q9BT09	278 aa		10.43	□□□□□ -0.74
DDX41-211	ENST00000510171	CINP	Q9BW66	212 aa	Predicted RBP	10.43	□□□□□ -0.74

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