RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 DEFB124Q8NES8 71 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 LPCAT1Q8NF37 534 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 PIH1D2Q8WWB5 315 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 BMFQ96LC9 184 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 TEKT5Q96M29 485 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 GLOD4Q9HC38 313 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 TRHDEQ9UKU6 1024 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 COQ6Q9Y2Z9 468 aa16.74■□□□□ 0.27
SNCA-209ENST00000506244 CAPN8A6NHC0 703 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 H3BM21 787 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 RECQL5O94762 991 aaPredicted RBP16.73■□□□□ 0.27
SNCA-209ENST00000506244 ITGAVP06756 1048 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 EIF3EP60228 445 aaKnown RBP16.73■□□□□ 0.27
SNCA-209ENST00000506244 FOXK2Q01167 660 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 ZNF211Q13398 564 aaPredicted RBP16.73■□□□□ 0.27
SNCA-209ENST00000506244 MTM1Q13496 603 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 PDE1CQ14123 709 aaPredicted RBP16.73■□□□□ 0.27
SNCA-209ENST00000506244 RPS6KA1Q15418 735 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 CNGA3Q16281 694 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 ITPRIPL1Q6GPH6 555 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 SLC22A18ASQ8N1D0 253 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 ATL2Q8NHH9 583 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 SETD7Q8WTS6 366 aaKnown RBP16.73■□□□□ 0.27
SNCA-209ENST00000506244 RBM15Q96T37 977 aaKnown RBP eCLIP16.73■□□□□ 0.27
SNCA-209ENST00000506244 CDC6Q99741 560 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 CHKBQ9Y259 395 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 DCHS1Q96JQ0 3298 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 KNL1Q8NG31 2342 aa16.73■□□□□ 0.27
SNCA-209ENST00000506244 CACNA1AO00555 2505 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 SPTY2D1-AS1A0A0U1RR47 76 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 NPIPB15A6NHN6 443 aaPredicted RBP16.72■□□□□ 0.27
SNCA-209ENST00000506244 KCNK3O14649 394 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 SH3BP5O60239 455 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 PCCBP05166 539 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 MMP2P08253 660 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 PDHA1P08559 390 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 RBP3P10745 1247 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 HTR1BP28222 390 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 HNRNPKP61978 463 aaKnown RBP eCLIP16.72■□□□□ 0.27
SNCA-209ENST00000506244 IL9RQ01113 521 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 SEMG2Q02383 582 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 WASHC5Q12768 1159 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 WSCD2Q2TBF2 565 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 CCDC70Q6NSX1 233 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 MACC1Q6ZN28 852 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 RAVER1Q8IY67 606 aaKnown RBP16.72■□□□□ 0.27
SNCA-209ENST00000506244 NUS1Q96E22 293 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 COQ10AQ96MF6 247 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 PPP1R2P1Q96PQ5 205 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 HERPUD2Q9BSE4 406 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 CARD9Q9H257 536 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 PCOLCE2Q9UKZ9 415 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 LRRK1Q38SD2 2015 aa16.72■□□□□ 0.27
SNCA-209ENST00000506244 CNOT1A5YKK6 2376 aaKnown RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 A8MX80 341 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 ZSCAN12O43309 604 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 ALPIP09923 528 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 CTPS1P17812 591 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 LHCGRP22888 699 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 KLF1Q13351 362 aaPredicted RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 HS1BP3Q53T59 392 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 MEI1Q5TIA1 1274 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 LRRC66Q68CR7 880 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 ESRP1Q6NXG1 681 aaKnown RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 AADACL2Q6P093 401 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 DARS2Q6PI48 645 aaKnown RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 DBX2Q6ZNG2 339 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 B4GALNT4Q76KP1 1039 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 ZNF567Q8N184 647 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 SAP25Q8TEE9 199 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 DTD2Q96FN9 168 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 LYSMD1Q96S90 227 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 SRPK1Q96SB4 655 aaKnown RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 MLPHQ9BV36 600 aaPredicted RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 FRMD8P1Q9BZ68 369 aaPredicted RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 MBNL1Q9NR56 388 aaKnown RBP16.71■□□□□ 0.27
SNCA-209ENST00000506244 DNAJC28Q9NX36 388 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 FAM153AQ9UHL3 310 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 RSPH14Q9UHP6 348 aa16.71■□□□□ 0.27
SNCA-209ENST00000506244 ANKRD66B4E2M5 251 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 CACNB4O00305 520 aaPredicted RBP16.7■□□□□ 0.26
SNCA-209ENST00000506244 PRLP01236 227 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 PYGLP06737 847 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 NME1P15531 152 aaKnown RBP16.7■□□□□ 0.26
SNCA-209ENST00000506244 TSHRP16473 764 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 NFKB1P19838 968 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 KELP23276 732 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 RBL1P28749 1068 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 HNF1BP35680 557 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 CDK18Q07002 472 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 FZD2Q14332 565 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 PCSK7Q16549 785 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 PRAMEF14Q5SWL7 426 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 DENND2CQ68D51 928 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 PID1Q7Z2X4 250 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 CCHCR1Q8TD31 782 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 RHBDD1Q8TEB9 315 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 BTN2A2Q8WVV5 523 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 TADA1Q96BN2 335 aa16.7■□□□□ 0.26
SNCA-209ENST00000506244 PDLIM2Q96JY6 352 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms