RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 WASH4PA8MWX3 477 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRIM24O15164 1050 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MGEA5O60502 916 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 MOCS2O96007 188 aaPredicted RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CCDC166P0CW27 439 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CST5P28325 142 aaPredicted RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CLCN5P51795 746 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PLK1P53350 603 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 INHBCP55103 352 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SQLEQ14534 574 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PSMD5Q16401 504 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 C6orf52Q5T4I8 152 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 AGAP9Q5VTM2 703 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 REP15Q6BDI9 236 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PAOXQ6QHF9 649 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TMEM207Q6UWW9 146 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CYHR1Q6ZMK1 362 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 ATP6V1E2Q96A05 226 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 CCDC126Q96EE4 140 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 IMP4Q96G21 291 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 RANBP9Q96S59 729 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 PCDHAC1Q9H158 963 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 GSTO2Q9H4Y5 243 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 TRPC7Q9HCX4 862 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 SUCOQ9UBS9 1254 aaKnown RBP16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 LZTS1Q9Y250 596 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 DOCK4Q8N1I0 1966 aa16.15■□□□□ 0.18
MSH5-SAPCD1-208ENST00000498473 UBFD1O14562 309 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PENKP01210 267 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ITGB1P05556 798 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C8BP07358 591 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF26P17031 533 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 KCNC1P48547 511 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MLLT6P55198 1093 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NRG1Q02297 640 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PDAP1Q13442 181 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TRIM25Q14258 630 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 HECTD2Q5U5R9 776 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PIK3R6Q5UE93 754 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GALNT4Q8N4A0 578 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 METTL25Q8N6Q8 603 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SH3RF2Q8TEC5 729 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RSPH1Q8WYR4 309 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CNBD2Q96M20 576 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC2A11Q9BYW1 496 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NOD1Q9Y239 953 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MTF2Q9Y483 593 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 F8W810 466 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PSMD12O00232 456 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 UBDO15205 165 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MMP2P08253 660 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SERPINH1P50454 418 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MGAT3Q09327 533 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GALNT1Q10472 559 aaPredicted RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 STX5Q13190 355 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 FASTKQ14296 549 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ACAP2Q15057 778 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MGAT5BQ3V5L5 792 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 AGKQ53H12 422 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 OVOS1Q6IE37 1185 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LRRC49Q8IUZ0 686 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 AHI1Q8N157 1196 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PHF21BQ96EK2 531 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF696Q9H7X3 374 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 EML4Q9HC35 981 aaKnown RBP16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 NDUFA13Q9P0J0 144 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TANC1Q9C0D5 1861 aa16.14■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 A0A1W2PQH9 124 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 J3KR12 359 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 VILLO15195 856 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RBP1P09455 135 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 RPL5P46777 297 aaKnown RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GJA8P48165 433 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CDKN2DP55273 166 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MAXP61244 160 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CREB5Q02930 508 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MYBPC3Q14896 1274 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 C8orf82Q6P1X6 216 aaPredicted RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 DNAJC14Q6Y2X3 702 aaPredicted RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 LDB1Q86U70 411 aaPredicted RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CILP2Q8IUL8 1156 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF683Q8IZ20 524 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SNX31Q8N9S9 440 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CALML6Q8TD86 181 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 TMEM106CQ9BVX2 250 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CCDC167Q9P0B6 97 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CD300AQ9UGN4 299 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CNOT11Q9UKZ1 510 aaKnown RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 VWA7Q9Y334 891 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 MYOCOSA0A1B0GUC4 107 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PRORSD1PA6NEY8 169 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ZNF623O75123 536 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CD86P42081 329 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 ARSDP51689 593 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 CLCN2P51788 898 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLC10A7Q0GE19 358 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 USP41Q3LFD5 358 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 PTAR1Q7Z6K3 402 aaPredicted RBP16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 GALNT7Q86SF2 657 aa16.13■□□□□ 0.17
MSH5-SAPCD1-208ENST00000498473 SLCO4A1Q96BD0 722 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms