RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 LIMA1Q9UHB6 759 aaKnown RBP12.7□□□□□ -0.38
SKA1-205ENST00000494518 RNF215Q9Y6U7 377 aa12.7□□□□□ -0.38
SKA1-205ENST00000494518 NOBOXO60393 691 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 GM2AP17900 193 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 ERCC2P18074 760 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 CDK11BP21127 795 aaKnown RBP12.69□□□□□ -0.38
SKA1-205ENST00000494518 SCNN1BP51168 640 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 MAPK10P53779 464 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 MAZP56270 477 aaKnown RBP12.69□□□□□ -0.38
SKA1-205ENST00000494518 KIAA1024LP59773 190 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 BCL2L1Q07817 233 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 GRM3Q14832 879 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 ACOX1Q15067 660 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 PHF19Q5T6S3 580 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 DENND2CQ68D51 928 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 LIPIQ6XZB0 460 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 TMPRSS9Q7Z410 1059 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 ARHGAP12Q8IWW6 846 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 ARFGAP1Q8N6T3 406 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 ANKRD20A12PQ8NF67 263 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 HCAR2Q8TDS4 363 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 MED8Q96G25 268 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 TUBGCP5Q96RT8 1024 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 DPEP2Q9H4A9 486 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 PTPN13Q12923 2485 aa12.69□□□□□ -0.38
SKA1-205ENST00000494518 PRAMEF33A0A0G2JMD5 474 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 CAPN8A6NHC0 703 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 B8ZZF3 427 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 SLC28A2O43868 658 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 PRAMEF10O60809 474 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 FERP16591 822 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 DESP17661 470 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 TNFAIP3P21580 790 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 MLLT3P42568 568 aaPredicted RBP12.68□□□□□ -0.38
SKA1-205ENST00000494518 AIF1P55008 147 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 MYL5Q02045 173 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 MAMLD1Q13495 774 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 AGERQ15109 404 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 AMZ1Q400G9 498 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 C14orf28Q4W4Y0 310 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 CERCAMQ5T4B2 595 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 SPECC1LQ69YQ0 1117 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 RFX8Q6ZV50 586 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 DPPA4Q7L190 304 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 PRICKLE2Q7Z3G6 844 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 SPRED1Q7Z699 444 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 ZFAND4Q86XD8 727 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 EXD3Q8N9H8 876 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 PDCD6IPQ8WUM4 868 aaKnown RBP12.68□□□□□ -0.38
SKA1-205ENST00000494518 EXTL1Q92935 676 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 TMEM74Q96NL1 305 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 WDR26Q9H7D7 661 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 FOXJ2Q9P0K8 574 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 LRIT1Q9P2V4 623 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 B4GALT6Q9UBX8 382 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 DGKBQ9Y6T7 804 aa12.68□□□□□ -0.38
SKA1-205ENST00000494518 GOLGA6CA6NDK9 693 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 GOLGA6BA6NDN3 693 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 GOLGA6DP0CG33 693 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 ATP1A3P13637 1013 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 GLB1P16278 677 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 MIPP30301 263 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 CCKBRP32239 447 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 OR1D5P58170 312 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 NFKB2Q00653 900 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 NFATC3Q12968 1075 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 EIF3IQ13347 325 aaKnown RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 ARHGEF7Q14155 803 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 PTPRRQ15256 657 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 MAP9Q49MG5 647 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 ERMARDQ5T6L9 678 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 AFMIDQ63HM1 303 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 SASS6Q6UVJ0 657 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 CYP4V2Q6ZWL3 525 aaPredicted RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 USP53Q70EK8 1073 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 APTXQ7Z2E3 356 aaKnown RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 OR6C4Q8NGE1 309 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 PTCD2Q8WV60 388 aaKnown RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 PATE1Q8WXA2 126 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 JPH3Q8WXH2 748 aaPredicted RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 USP7Q93009 1102 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 ECHDC3Q96DC8 303 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 ERGIC2Q96RQ1 377 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 TRIM4Q9C037 500 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 SEMA6CQ9H3T2 930 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 CARS2Q9HA77 564 aaKnown RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 RDH14Q9HBH5 336 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 SPATS2LQ9NUQ6 558 aaKnown RBP12.67□□□□□ -0.38
SKA1-205ENST00000494518 GOLGA6AQ9NYA3 693 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 PCDHGA7Q9Y5G6 932 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 NBASA2RRP1 2371 aa12.67□□□□□ -0.38
SKA1-205ENST00000494518 A0A0U1RQS6 177 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 PRSS38A1L453 326 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 TMX2-CTNND1H3BSU7 103 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 TRAFD1O14545 582 aaPredicted RBP12.66□□□□□ -0.38
SKA1-205ENST00000494518 PRPSAP2O60256 369 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 KELP23276 732 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 AK4P27144 223 aaPredicted RBP12.66□□□□□ -0.38
SKA1-205ENST00000494518 HTR7P34969 479 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 CSNK1DP48730 415 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms