RNA–Protein interactions for RNA: ENST00000493430.5

PTCD3-218, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 782 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-218ENST00000493430 NPPBP16860 134 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 GNLYP22749 145 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 RPS12P25398 132 aaKnown RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 AKT1P31749 480 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 PPP3CCP48454 512 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 AMTP48728 403 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 HSPA7P48741 367 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 NUDT6P53370 316 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 OAZ1P54368 228 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 IRX6P78412 446 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 RNASELQ05823 741 aaKnown RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 HNF4GQ14541 408 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 IZUMO3Q5VZ72 239 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 WBP2NLQ6ICG8 309 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 APOBEC3HQ6NTF7 200 aaKnown RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 CDC42EP5Q6NZY7 148 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 RASGRP2Q7LDG7 609 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 C11orf96Q7Z7L8 435 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 PALB2Q86YC2 1186 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 ENDOVQ8N8Q3 282 aaKnown RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 TET1Q8NFU7 2136 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 OTUD7AQ8TE49 926 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 SLC35F5Q8WV83 523 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 TMED6Q8WW62 240 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 RIPOR3Q96MK2 946 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 NEUROD6Q96NK8 337 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 MECRQ9BV79 373 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 FRMD8Q9BZ67 464 aaPredicted RBP3.39□□□□□ -1.87
PTCD3-218ENST00000493430 HMG20BQ9P0W2 317 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 PTPRCP08575 1304 aa3.39□□□□□ -1.87
PTCD3-218ENST00000493430 CENPFP49454 3210 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 A0A0B4J293 547 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 CCL15-CCL14A0A0B4J2E2 113 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MBD3L5A6NJ08 208 aaPredicted RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 SLC38A8A6NNN8 435 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 CCER2I3L3R5 266 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 PIP5K1BO14986 540 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 DNPH1O43598 174 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 WDHD1O75717 1129 aaPredicted RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 UNGP13051 313 aaPredicted RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 NAGAP17050 411 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 BTDP43251 543 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 TUBA1BP68363 451 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MECOMQ03112 1051 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 SF3A3Q12874 501 aaKnown RBP eCLIP3.38□□□□□ -1.872e-9■■□□□ 14
PTCD3-218ENST00000493430 PUM3Q15397 648 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 CCL15Q16663 113 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MPEG1Q2M385 716 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 ALDH1L2Q3SY69 923 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 FAM171A1Q5VUB5 890 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 FBXL22Q6P050 247 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 ATF7IPQ6VMQ6 1270 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 APOBEC3FQ8IUX4 373 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MIGA1Q8NAN2 632 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 CEP76Q8TAP6 659 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 IPO4Q8TEX9 1081 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 WBP1Q96G27 269 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 HES6Q96HZ4 224 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 IGSF21Q96ID5 467 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 GFM1Q96RP9 751 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 FIZ1Q96SL8 496 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 PRPF18Q99633 342 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 NPAS1Q99742 590 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 DNAJC18Q9H819 358 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 DBNLQ9UJU6 430 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 SLC39A10Q9ULF5 831 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 SRPRBQ9Y5M8 271 aaKnown RBP3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MROH5Q6ZUA9 1318 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 MYO3BQ8WXR4 1341 aa3.38□□□□□ -1.87
PTCD3-218ENST00000493430 ARID2Q68CP9 1835 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 C17orf102A2RUQ5 167 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 RASA4BC9J798 803 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 RASA4O43374 803 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 LDB2O43679 373 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 PRKAB2O43741 272 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 PLA2G6O60733 806 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 TMCC1O94876 653 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 SOX30O94993 753 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 MYL3P08590 195 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 SNRNP70P08621 437 aaKnown RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 ENO3P13929 434 aaPredicted RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 TCEA1P23193 301 aaKnown RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 ITGB8P26012 769 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 CDH12P55289 794 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 DLX5P56178 289 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 RHBDL3P58872 404 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 MAP2K1Q02750 393 aaPredicted RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 TRAF3Q13114 568 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 OS9Q13438 667 aaPredicted RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 UBE4AQ14139 1066 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 KRTAP24-1Q3LI83 254 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 ZACNQ401N2 412 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 C5orf22Q49AR2 442 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 C15orf52Q6ZUT6 534 aaKnown RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 CCAR1Q8IX12 1150 aaKnown RBP3.37□□□□□ -1.87
PTCD3-218ENST00000493430 OR2C3Q8N628 320 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 TMEM163Q8TC26 289 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 TMEM255BQ8WV15 326 aa3.37□□□□□ -1.87
PTCD3-218ENST00000493430 HMGB4Q8WW32 186 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms