RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 EPOP01588 193 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 TRBC1P01850 177 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 ACSL1P33121 698 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 MAGEA6P43360 314 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 SARNPP82979 210 aaKnown RBP17.25■□□□□ 0.35
LIME1-208ENST00000493265 ARHGAP8P85298 464 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 SPEM2Q0P670 501 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 SEPT6Q14141 434 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 DENND5AQ6IQ26 1287 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 PRR23BQ6ZRT6 265 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 USP30Q70CQ3 517 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 TSPAN33Q86UF1 283 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 BBOF1Q8ND07 529 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 PWWP2AQ96N64 755 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 GRHL1Q9NZI5 618 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 WHRNQ9P202 907 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 USP36Q9P275 1121 aaKnown RBP17.25■□□□□ 0.35
LIME1-208ENST00000493265 FZD4Q9ULV1 537 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 SPO11Q9Y5K1 396 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 RALGAPA1Q6GYQ0 2036 aa17.25■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3DA0A087WVF3 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3IA0A087WXS9 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3EA0A087X179 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3KA0A087X1G2 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3FA6NER0 549 aaPredicted RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 CAPN8A6NHC0 703 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3LB9A6J9 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 SPINT1O43278 529 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 ZNF217O75362 1048 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 AVILO75366 819 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3HP0C7X1 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 CYP2A6P11509 494 aaPredicted RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 TGM1P22735 817 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 NFKBIAP25963 317 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 ADPRHP54922 357 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 PLTPP55058 493 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TAS2R38P59533 333 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 CDK16Q00536 496 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 CDH17Q12864 832 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 POU6F1Q14863 301 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 MORF4L2Q15014 288 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 USP39Q53GS9 565 aaKnown RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 CERCAMQ5T4B2 595 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3GQ6DHY5 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3CQ6IPX1 549 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 HIBCHQ6NVY1 386 aaPredicted RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 TBC1D3Q8IZP1 549 aaPredicted RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 DEFB119Q8N690 84 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 SCRN2Q96FV2 425 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TOE1Q96GM8 510 aaKnown RBP17.24■□□□□ 0.35
LIME1-208ENST00000493265 BTBD1Q9H0C5 482 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 CASS4Q9NQ75 786 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 FADS3Q9Y5Q0 445 aa17.24■□□□□ 0.35
LIME1-208ENST00000493265 TPRP12270 2363 aaKnown RBP17.23■□□□□ 0.35
LIME1-208ENST00000493265 EPG5Q9HCE0 2579 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 IGHV1OR15-9A0A0B4J2B8 117 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 C1orf232A0A0U1RR37 186 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 CCDC78A2IDD5 438 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 MAP3K13O43283 966 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 PLRG1O43660 514 aaKnown RBP17.23■□□□□ 0.35
LIME1-208ENST00000493265 BUD23O43709 281 aaKnown RBP17.23■□□□□ 0.35
LIME1-208ENST00000493265 MMP20O60882 483 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 NDUFS2O75306 463 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 MGAT1P26572 445 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 CD6P30203 668 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 OXTRP30559 389 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 VIPR1P32241 457 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 MMP12P39900 470 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 CRADDP78560 199 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 ELP6Q0PNE2 266 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 ARHGEF7Q14155 803 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 HLTFQ14527 1009 aaKnown RBP eCLIP17.23■□□□□ 0.35
LIME1-208ENST00000493265 CCDC38Q502W7 563 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 LRRC8BQ6P9F7 803 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 CRTC1Q6UUV9 634 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 ZNF534Q76KX8 674 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 DPPA4Q7L190 304 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 LYSMD3Q7Z3D4 306 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 HOOK3Q86VS8 718 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 MCUQ8NE86 351 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 CXorf40AQ8TE69 158 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 KLK6Q92876 244 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 RAB7BQ96AH8 199 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 SPACA7Q96KW9 195 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 GPR174Q9BXC1 333 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 GPR63Q9BZJ6 419 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 FAM114A2Q9NRY5 505 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 ZNF711Q9Y462 761 aa17.23■□□□□ 0.35
LIME1-208ENST00000493265 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.23■□□□□ 0.35
LIME1-208ENST00000493265 LRRC72A6NJI9 287 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 NDC80O14777 642 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 AURKAO14965 403 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 AREL1O15033 823 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SLC7A4O43246 635 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 RNGTTO60942 597 aaKnown RBP17.22■□□□□ 0.35
LIME1-208ENST00000493265 BANF1O75531 89 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 CLDN7O95471 211 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 SEMA4FO95754 770 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 LHCGRP22888 699 aa17.22■□□□□ 0.35
LIME1-208ENST00000493265 MAT2AP31153 395 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms