RNA–Protein interactions for RNA: ENST00000493161.1

SAMM50-204, Transcript of SAMM50 sorting and assembly machinery component, human

TSL 3

Gene SAMM50, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SAMM50-204	ENST00000493161	NUDT21	O43809	227 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	PRAMEF11	O60813	436 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	FGF1	P05230	155 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	FGF3	P11487	239 aa	Predicted RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	ALDH4A1	P30038	563 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	TRIM23	P36406	574 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	JAM2	P57087	298 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	POLR2F	P61218	127 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	RPL7A	P62424	266 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	MAP9	Q49MG5	647 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	CFAP58	Q5T655	872 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	SRL	Q86TD4	932 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	PTRH1	Q86Y79	214 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	ZSCAN1	Q8NBB4	408 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	PATE1	Q8WXA2	126 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	SELENOO	Q9BVL4	669 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	SLC39A8	Q9C0K1	460 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	SLC25A18	Q9H1K4	315 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	NLRC4	Q9NPP4	1024 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	ST14	Q9Y5Y6	855 aa		13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	TLN1	Q9Y490	2541 aa	Known RBP	13.74	□□□□□ -0.21
SAMM50-204	ENST00000493161	PTPN13	Q12923	2485 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	IGHV5-10-1	A0A0J9YXX1	117 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	PRSS38	A1L453	326 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	TTC24	A2A3L6	582 aa	Predicted RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	SIGLEC16	A6NMB1	481 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	IQCJ-SCHIP1	C9J366	451 aa	Predicted RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	TNFRSF10C	O14798	259 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	PPFIA2	O75334	1257 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	ELFN1	P0C7U0	828 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	SFTPC	P11686	197 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	CD1C	P29017	333 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	SOX5	P35711	763 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	PAPOLA	P51003	745 aa	Known RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	GSC	P56915	257 aa	Predicted RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	BECN1	Q14457	450 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	GRM3	Q14832	879 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	TCP11X2	Q5H9J9	407 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	NKAIN2	Q5VXU1	208 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	AFMID	Q63HM1	303 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	PNCK	Q6P2M8	343 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	ARHGAP36	Q6ZRI8	547 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	DPPA4	Q7L190	304 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	PIM3	Q86V86	326 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	C17orf82	Q86X59	251 aa	Predicted RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	GPBAR1	Q8TDU6	330 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	NKD1	Q969G9	470 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	ECHDC3	Q96DC8	303 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	CCDC74B	Q96LY2	380 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	TUBGCP5	Q96RT8	1024 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	CATSPERB	Q9H7T0	1116 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	SDK2	Q58EX2	2172 aa		13.73	□□□□□ -0.21
SAMM50-204	ENST00000493161	ZFC3H1	O60293	1989 aa	Known RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CFAP69	A5D8W1	941 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	TRAFD1	O14545	582 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ECEL1	O95672	775 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CPNE6	O95741	557 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CEACAM5	P06731	702 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	HOXC4	P09017	264 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CCNB1	P14635	433 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	MPST	P25325	297 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	AK4	P27144	223 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ERCC5	P28715	1186 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	SERPINA4	P29622	427 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	NSF	P46459	744 aa	Known RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CSNK1D	P48730	415 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ZNF143	P52747	638 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	OGDH	Q02218	1023 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ACOX1	Q15067	660 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CA9	Q16790	459 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	SKIDA1	Q1XH10	827 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CLEC16A	Q2KHT3	1053 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	MON1B	Q7L1V2	547 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ZNF438	Q7Z4V0	828 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	PHF13	Q86YI8	300 aa	Predicted RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	C3orf20	Q8ND61	904 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ZDHHC1	Q8WTX9	485 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	MCEE	Q96PE7	176 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	VPS16	Q9H269	839 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	WDR26	Q9H7D7	661 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	ATP13A3	Q9H7F0	1226 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	CARS2	Q9HA77	564 aa	Known RBP	13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	TMEM9	Q9P0T7	183 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	TAAR2	Q9P1P5	351 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	PLEKHM1	Q9Y4G2	1056 aa		13.72	□□□□□ -0.21
SAMM50-204	ENST00000493161	RHPN2P1	A8MT19	583 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	STMND1	H3BQB6	276 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	PPM1D	O15297	605 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	PALM	O75781	387 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	LIF	P15018	202 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	KEL	P23276	732 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	CD82	P27701	267 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	STAT1	P42224	750 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	POLD2	P49005	469 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	NDST2	P52849	883 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	TPI1	P60174	286 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	UBE2H	P62256	183 aa		13.71	□□□□□ -0.21
SAMM50-204	ENST00000493161	BCL2L1	Q07817	233 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms