RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ARIH1Q9Y4X5 557 aaPredicted RBP21.16■□□□□ 0.98
CCDC88B-208ENST00000492980 GOLGA8QA0A0J9YX86 632 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 GOLGA8OA6NCC3 632 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 GOLGA8NF8WBI6 632 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 CRTAMO95727 393 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 RBP1P09455 135 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 OGNP20774 298 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 KCNA5P22460 613 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 SLC26A3P40879 764 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 EPHB3P54753 998 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 SMAD3P84022 425 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 NAA25Q14CX7 972 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 SCUBE1Q8IWY4 988 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 RMDN1Q96DB5 314 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 CDKN2AIPNLQ96HQ2 116 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 OSBPL1AQ9BXW6 950 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 TRPC7Q9HCX4 862 aa21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 CORO1CQ9ULV4 474 aaPredicted RBP21.15■□□□□ 0.98
CCDC88B-208ENST00000492980 A8MT66 165 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 H0Y3Z8 333 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 LATS1O95835 1130 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CD160O95971 181 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 C1RP00736 705 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CLTBP09497 229 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CES1P23141 567 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 SERPINB5P36952 375 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 GPR158Q5T848 1215 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 ZNF783Q6ZMS7 281 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CMTR2Q8IYT2 770 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 ULK2Q8IYT8 1036 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 KDM1BQ8NB78 822 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CMTM5Q96DZ9 223 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 CLPTM1LQ96KA5 538 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 THTPAQ9BU02 230 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 NUF2Q9BZD4 464 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 DCLRE1BQ9H816 532 aa21.14■□□□□ 0.98
CCDC88B-208ENST00000492980 KIAA1671Q9BY89 1806 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 NEMP1O14524 444 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 SCAMP3O14828 347 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 SNAP91O60641 907 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 TBL1XO60907 577 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 PDHA1P08559 390 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 PRDX6P30041 224 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 TIAL1Q01085 375 aaKnown RBP eCLIP21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 KLF10Q13118 480 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 TYSND1Q2T9J0 566 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 LINGO4Q6UY18 593 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 MDGA1Q8NFP4 955 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 ADAMTS19Q8TE59 1207 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 CCDC126Q96EE4 140 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 CNDP1Q96KN2 507 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 PPP1R36Q96LQ0 422 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 CYP4F12Q9HCS2 524 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 ANKRD36A6QL64 1941 aa21.14■□□□□ 0.97
CCDC88B-208ENST00000492980 GREM1O60565 184 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 ZMPSTE24O75844 475 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 IPO13O94829 963 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 TMCC1O94876 653 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 SNUPNO95149 360 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 SLC4A1P02730 911 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 JUNP05412 331 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 EPHA3P29320 983 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 STC1P52823 247 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 SLC25A3Q00325 362 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 TAF1AQ15573 450 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 LSM12Q3MHD2 195 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 GLT6D1Q7Z4J2 308 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 CARNMT1Q8N4J0 409 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 SMIM14Q96QK8 99 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 IL21Q9HBE4 155 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 RAI2Q9Y5P3 530 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 PRSS56P0CW18 603 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 HOXB8P17481 243 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 PSMA3P25788 255 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 SUOXP51687 545 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 CCNG1P51959 295 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 WDR5P61964 334 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 LPCAT1Q8NF37 534 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 PCDHGC4Q9Y5F7 938 aa21.13■□□□□ 0.97
CCDC88B-208ENST00000492980 H0Y626 953 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 TEX28O15482 410 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 OLFM2O95897 454 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ITGB8P26012 769 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 MZF1P28698 734 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 GTF2A1P52655 376 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ZXDBP98169 803 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ACAD11Q709F0 780 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 NET1Q7Z628 596 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 SDCCAG8Q86SQ7 713 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ISCA2Q86U28 154 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ARL14EPQ8N8R7 260 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 OR4K2Q8NGD2 314 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 KCNV2Q8TDN2 545 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 CCDC28BQ9BUN5 200 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 ALG9Q9H6U8 611 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 MRPL17Q9NRX2 175 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 SLC7A8Q9UHI5 535 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 CDYLQ9Y232 598 aa21.12■□□□□ 0.97
CCDC88B-208ENST00000492980 TMEM233B4DJY2 109 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 GFRA2O00451 464 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms