RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 LURAP1LQ8IV03 231 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TMTC2Q8N394 836 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 NKAPQ8N5F7 415 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TMEM163Q8TC26 289 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 NUDCD2Q8WVJ2 157 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CNOT9Q92600 299 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 RILPL2Q969X0 211 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 RNF183Q96D59 192 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 RNFT2Q96EX2 444 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 URB1-AS1Q96HZ7 61 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TXNDC15Q96J42 360 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CDX2Q99626 313 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 HERC2P3Q9BVR0 1158 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CXorf56Q9H5V9 222 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 STN1Q9H668 368 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 EPHX3Q9H6B9 360 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ITM2CQ9NQX7 267 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ATP8A2Q9NTI2 1148 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 STK26Q9P289 416 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CD207Q9UJ71 328 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CHD8Q9HCK8 2581 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ARFGEF1Q9Y6D6 1849 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ITSN1Q15811 1721 aa2.28□□□□□ -2.05
HMGB1-208ENST00000490788 SPTBN5Q9NRC6 3674 aaKnown RBP2.28□□□□□ -2.05
HMGB1-208ENST00000490788 CACNA1BQ00975 2339 aa2.28□□□□□ -2.05
HMGB1-208ENST00000490788 COL5A2P05997 1499 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 KDM6AO15550 1401 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CASKIN1Q8WXD9 1431 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SBF1O95248 1867 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 RNF123Q5XPI4 1314 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ARHGAP10A1A4S6 786 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 DENND3A2RUS2 1198 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 VWA3AA6NCI4 1184 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SH2D7A6NKC9 451 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TTC36A6NLP5 189 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 B9A039 149 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 I6L893 689 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CHL1O00533 1208 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TCERG1O14776 1098 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 LDB2O43679 373 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SLC28A2O43868 658 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 DHX16O60231 1041 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CEP104O60308 925 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 KCNJ13O60928 360 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ATP2C2O75185 946 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 GUCY1B2O75343 617 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CLDN7O95471 211 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ADAP00813 363 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CHRM4P08173 479 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 FGF3P11487 239 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PCNAP12004 261 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 HSD3B1P14060 373 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ZNF8P17098 575 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PGM1P36871 562 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 RPL3P39023 403 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ANP32AP39687 249 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 LIFRP42702 1097 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 GPD2P43304 727 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PTPN9P43378 593 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CCT5P48643 541 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 AMTP48728 403 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PEX5P50542 639 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 UBE3AQ05086 875 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 FOXD4Q12950 439 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TRAF1Q13077 416 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ITGADQ13349 1161 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CAPSQ13938 189 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SLC39A14Q15043 492 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SLC18A3Q16572 532 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ME3Q16798 604 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 IZUMO4Q1ZYL8 232 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 LRIT3Q3SXY7 679 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 INO80DQ53TQ3 878 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 EFHC1Q5JVL4 640 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ZNF324BQ6AW86 544 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 NADSYN1Q6IA69 706 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CES5AQ6NT32 575 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 RGMBQ6NW40 437 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 KLHL24Q6TFL4 600 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 LDHAL6AQ6ZMR3 332 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ADGRG6Q86SQ4 1221 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ZNF354CQ86Y25 554 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TDHQ8IZJ6 230 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SETD9Q8NE22 299 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ZMIZ2Q8NF64 920 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 GDPD5Q8WTR4 605 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PPM1EQ8WY54 764 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TRIM44Q96DX7 344 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 MTBPQ96DY7 904 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 PHF21BQ96EK2 531 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 ZC3HAV1LQ96H79 300 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 CAMK1GQ96NX5 476 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 MMTAG2Q9BU76 263 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 NPFFR1Q9GZQ6 430 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SLCO5A1Q9H2Y9 848 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 MROH8Q9H579 483 aa2.27□□□□□ -2.05
HMGB1-208ENST00000490788 C6orf106Q9H6K1 298 aaPredicted RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 TLR8Q9NR97 1041 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 SPATS2LQ9NUQ6 558 aaKnown RBP2.27□□□□□ -2.05
HMGB1-208ENST00000490788 BABAM1Q9NWV8 329 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms