RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FERP16591 822 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 ITIH1P19827 911 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 TRIM23P36406 574 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 ZFP36L1Q07352 338 aaKnown RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 IL10RBQ08334 325 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 HLTFQ14527 1009 aaKnown RBP eCLIP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 RFTN1Q14699 578 aaPredicted RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 C14orf28Q4W4Y0 310 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 CERCAMQ5T4B2 595 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 ERMARDQ5T6L9 678 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 PLEKHA7Q6IQ23 1121 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 CLEC17AQ6ZS10 378 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 TMPRSS9Q7Z410 1059 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 IRF2BP2Q7Z5L9 587 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 SPRED1Q7Z699 444 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 TP53INP2Q8IXH6 220 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 Q8N9G6 341 aaPredicted RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 FAM46DQ8NEK8 389 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 EIF3CQ99613 913 aaKnown RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 HSD3B7Q9H2F3 369 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 LRIT1Q9P2V4 623 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 RNF215Q9Y6U7 377 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 UNC13CQ8NB66 2214 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 ZNF462Q96JM2 2506 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 PRSS38A1L453 326 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 A8MX80 341 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 AGRPO00253 132 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 TNFRSF10CO14798 259 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 NVLO15381 856 aaKnown RBP12.43□□□□□ -0.42
CPSF3-204ENST00000489403 DAPK3O43293 454 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 CCDC172P0C7W6 258 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 LIPCP11150 499 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 TNFAIP3P21580 790 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 KELP23276 732 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 ETV5P41161 510 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 SCNN1BP51168 640 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 NSUN2Q08J23 767 aaKnown RBP eCLIP12.43□□□□□ -0.42
CPSF3-204ENST00000489403 NCAPHQ15003 741 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 SPECC1LQ69YQ0 1117 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 PNCKQ6P2M8 343 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 SLITRK4Q8IW52 837 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 PAF1Q8N7H5 531 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 TRIM7Q9C029 511 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 DPEP2Q9H4A9 486 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 WDR26Q9H7D7 661 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 CYP4F12Q9HCS2 524 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 PARVAQ9NVD7 372 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 ANO10Q9NW15 660 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 B4GALT6Q9UBX8 382 aa12.43□□□□□ -0.42
CPSF3-204ENST00000489403 ARHGEF17Q96PE2 2063 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PRAMEF33A0A0G2JMD5 474 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 TTC24A2A3L6 582 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 TMEM191CA6NGB0 347 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PYCARD-AS1I3L0S3 204 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 NUDT21O43809 227 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PRAMEF10O60809 474 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 CDK11BP21127 795 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 MIPP30301 263 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 MAZP56270 477 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 AP1S1P61966 158 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 POLR2LP62875 67 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 DPYSQ14117 519 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 LBRQ14739 615 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 ACOX1Q15067 660 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 STX1AQ16623 288 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 LINC00303Q3SY05 128 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PPP6R3Q5H9R7 873 aaPredicted RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 TMCO4Q5TGY1 634 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PPP1R2P3Q6NXS1 205 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 SASS6Q6UVJ0 657 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 EXD3Q8N9H8 876 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 TMEM159Q96B96 161 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 NUS1Q96E22 293 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 COQ10AQ96MF6 247 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 PSKH2Q96QS6 385 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 CWC15Q9P013 229 aaKnown RBP12.42□□□□□ -0.42
CPSF3-204ENST00000489403 FOXJ2Q9P0K8 574 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 SEPT3Q9UH03 358 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 MOSPD1Q9UJG1 213 aa12.42□□□□□ -0.42
CPSF3-204ENST00000489403 ASH1LQ9NR48 2969 aaKnown RBP12.41□□□□□ -0.42
CPSF3-204ENST00000489403 LRRC53A6NM62 1247 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 C9orf172C9J069 976 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 TEX33O43247 280 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 HTRA2O43464 458 aaPredicted RBP12.41□□□□□ -0.42
CPSF3-204ENST00000489403 PRPSAP2O60256 369 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 SOCS5O75159 536 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 LRCH4O75427 683 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 RNF8O76064 485 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 MYCLP1P12525 358 aaPredicted RBP12.41□□□□□ -0.42
CPSF3-204ENST00000489403 ATP1A3P13637 1013 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 CCNB1P14635 433 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 CR2P20023 1033 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 RENBPP51606 427 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 B4GALNT1Q00973 533 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 SLC10A7Q0GE19 358 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 ARHGEF7Q14155 803 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 CNGA3Q16281 694 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 TSR1Q2NL82 804 aaKnown RBP12.41□□□□□ -0.42
CPSF3-204ENST00000489403 MAP9Q49MG5 647 aa12.41□□□□□ -0.42
CPSF3-204ENST00000489403 HEATR4Q86WZ0 1026 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms