RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	HCAR3	P49019	387 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	STK19	P49842	368 aa	Predicted RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	CCR5	P51681	352 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	METAP1	P53582	386 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	ADPRH	P54922	357 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	RWDD2B	P57060	319 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	DAB2	P98082	770 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	NRG1	Q02297	640 aa	Predicted RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	SLC12A1	Q13621	1099 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	LY6D	Q14210	128 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	RPS6KA1	Q15418	735 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	SMTNL2	Q2TAL5	461 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	TBC1D25	Q3MII6	688 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	POM121L1P	Q3SYA9	428 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	RAB6C	Q53S08	254 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	PITRM1	Q5JRX3	1037 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	ZNF569	Q5MCW4	686 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	CCDC181	Q5TID7	509 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	OTUD1	Q5VV17	481 aa	Predicted RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	KANSL1	Q7Z3B3	1105 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	C14orf80	Q86SX3	495 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	PRPF39	Q86UA1	669 aa	Known RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	TREML1	Q86YW5	311 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	APCDD1	Q8J025	514 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	LZTR1	Q8N653	840 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	ARFGAP1	Q8N6T3	406 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	LSM14A	Q8ND56	463 aa	Known RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	PTPRN2	Q92932	1015 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	RBM41	Q96IZ5	413 aa	Known RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	LMLN	Q96KR4	655 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	MYOC	Q99972	504 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	SNRNP25	Q9BV90	132 aa	Known RBP	8.86	□□□□□ -0.99
USP4-213	ENST00000488520	SEMA4C	Q9C0C4	833 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	RAB6C	Q9H0N0	254 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	MUC3B	Q9H195	1237 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	TRIM10	Q9UDY6	481 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	FZD4	Q9ULV1	537 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	CA5B	Q9Y2D0	317 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	HYOU1	Q9Y4L1	999 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	SNX10	Q9Y5X0	201 aa		8.86	□□□□□ -0.99
USP4-213	ENST00000488520	DOPEY2	Q9Y3R5	2298 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	EDDM13	A0A1B0GTR0	161 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	TARSL2	A2RTX5	802 aa	Known RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	LRRD1	A4D1F6	860 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520		M0R082	166 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	TRIM38	O00635	465 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	FFAR2	O15552	330 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	LRIG2	O94898	1065 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	LUC7L3	O95232	432 aa	Known RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ALB	P02768	609 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	KRT1	P04264	644 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ASL	P04424	464 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	MPO	P05164	745 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	RHOC	P08134	193 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	C5AR1	P21730	350 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ACP1	P24666	158 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	IL1R2	P27930	398 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	MZF1	P28698	734 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	SERPINB6	P35237	376 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ETFB	P38117	255 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	RXRG	P48443	463 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	TAS2R40	P59535	323 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	GNG11	P61952	73 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ECT2L	Q008S8	904 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ILK	Q13418	452 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	TFDP2	Q14188	446 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ATP13A4	Q4VNC1	1196 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	RNF219	Q5W0B1	726 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	NAPEPLD	Q6IQ20	393 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	BZW1	Q7L1Q6	419 aa	Known RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	SETD3	Q86TU7	594 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	RFX6	Q8HWS3	928 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	REXO1L1P	Q8IX06	675 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	CCAR2	Q8N163	923 aa	Known RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	PYROXD2	Q8N2H3	581 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	OXR1	Q8N573	874 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	DCBLD1	Q8N8Z6	715 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	MFSD2A	Q8NA29	543 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ZNF417	Q8TAU3	575 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	KLK6	Q92876	244 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ZNF587	Q96SQ5	575 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	PRMT1	Q99873	361 aa	Known RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	SPON2	Q9BUD6	331 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	SAP130	Q9H0E3	1048 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ERVMER34-1	Q9H9K5	563 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	MPP6	Q9NZW5	540 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	RCOR3	Q9P2K3	495 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	DNAI1	Q9UI46	699 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	SALL4	Q9UJQ4	1053 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	PYCARD	Q9ULZ3	195 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	JRKL	Q9Y4A0	524 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	PCDHA3	Q9Y5H8	950 aa		8.85	□□□□□ -0.99
USP4-213	ENST00000488520	ARHGEF17	Q96PE2	2063 aa	Predicted RBP	8.85	□□□□□ -0.99
USP4-213	ENST00000488520	HECTD1	Q9ULT8	2610 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	BOD1L1	Q8NFC6	3051 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	LRP4	O75096	1905 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	GRID2IP	A4D2P6	1211 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	ARHGAP42	A6NI28	874 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	FAM72C	H0Y354	149 aa		8.84	□□□□□ -0.99
USP4-213	ENST00000488520	LAT	O43561	262 aa		8.84	□□□□□ -0.99

Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms