RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 CYP4X1Q8N118 509 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 CCDC89Q8N998 374 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 LPCAT1Q8NF37 534 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 HCAR2Q8TDS4 363 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 DNASE2BQ8WZ79 361 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 NAP1L3Q99457 506 aaPredicted RBP8.09□□□□□ -1.11
USP40-216ENST00000485943 VAT1Q99536 393 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 LGMNQ99538 433 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 LACRTQ9GZZ8 138 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 NOL6Q9H6R4 1146 aaKnown RBP8.09□□□□□ -1.11
USP40-216ENST00000485943 PDFQ9HBH1 243 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 TMEM74BQ9NUR3 256 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 KCTD5Q9NXV2 234 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 DTLQ9NZJ0 730 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 DKK3Q9UBP4 350 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 LHX3Q9UBR4 397 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 TRIM10Q9UDY6 481 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 PACSIN2Q9UNF0 486 aaPredicted RBP8.09□□□□□ -1.11
USP40-216ENST00000485943 PPP2R2CQ9Y2T4 447 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 PCDHGC4Q9Y5F7 938 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 RAI2Q9Y5P3 530 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 DUSP10Q9Y6W6 482 aa8.09□□□□□ -1.11
USP40-216ENST00000485943 hCG_1818297A0A087WSY0 165 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 GOLGA6L10A0A0M3HER8 536 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 GRID2IPA4D2P6 1211 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 TLR4O00206 839 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 CACNB4O00305 520 aaPredicted RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 PDE2AO00408 941 aaPredicted RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 KCNK3O14649 394 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 KCNN4O15554 427 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 MMP20O60882 483 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PCCBP05166 539 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 VIPR1P32241 457 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 RABIFP47224 123 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 NOVA1P51513 510 aaKnown RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 DAB2P98082 770 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 DSC2Q02487 901 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PPIDQ08752 370 aaKnown RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 LRRC14Q15048 493 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 TLR1Q15399 786 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 AFMIDQ63HM1 303 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 SEL1L3Q68CR1 1132 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 SLC9A4Q6AI14 798 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PLD5Q8N7P1 536 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 MFSD2AQ8NA29 543 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 DENND6BQ8NEG7 585 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 RHBDD1Q8TEB9 315 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 HTR3CQ8WXA8 447 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 KRT35Q92764 455 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 FAF2Q96CS3 445 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 TSGA13Q96PP4 275 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 SRPK1Q96SB4 655 aaKnown RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 MGME1Q9BQP7 344 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 CEP41Q9BYV8 373 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 GPR63Q9BZJ6 419 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 SLC13A1Q9BZW2 595 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 NOD2Q9HC29 1040 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PCDH9Q9HC56 1237 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 CD248Q9HCU0 757 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PARD6AQ9NPB6 346 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 FZD3Q9NPG1 666 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PCDH12Q9NPG4 1184 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 FSCN3Q9NQT6 498 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 TM7SF3Q9NS93 570 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 DNAJC28Q9NX36 388 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 PKD2L2Q9NZM6 624 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 TRHDEQ9UKU6 1024 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 ITM2BQ9Y287 266 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 FADS3Q9Y5Q0 445 aa8.08□□□□□ -1.12
USP40-216ENST00000485943 ZFHX2Q9C0A1 2572 aaPredicted RBP8.08□□□□□ -1.12
USP40-216ENST00000485943 C1orf232A0A0U1RR37 186 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 NEMP2A6NFY4 417 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 F5H423 210 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 CDK2AP1O14519 115 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 VILLO15195 856 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 FLRT2O43155 660 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 CEP104O60308 925 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 PMPCBO75439 489 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 ANXA9O76027 345 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 HEXIM1O94992 359 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 IFNB1P01574 187 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 HLA-DQB2P05538 268 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 IGHV4-34P06331 123 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 RBP3P10745 1247 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 C6P13671 934 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 CTPS1P17812 591 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 IL4RP24394 825 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 GPR1P46091 355 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 LIG3P49916 1009 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 BLKP51451 505 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 ARSEP51690 589 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 GEMP55040 296 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 HNRNPKP61978 463 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP40-216ENST00000485943 IL9RQ01113 521 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 OTUD4Q01804 1114 aaKnown RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 XRCC4Q13426 336 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 PDE1CQ14123 709 aaPredicted RBP8.07□□□□□ -1.12
USP40-216ENST00000485943 LONRF2Q1L5Z9 754 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 ZNF284Q2VY69 593 aa8.07□□□□□ -1.12
USP40-216ENST00000485943 HLA-BQ31612 363 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms