RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 NOS2P35228 1153 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ASPAP45381 313 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 PRKAA2P54646 552 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 EPGNQ6UW88 154 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 CHSY3Q70JA7 882 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ZC3H7AQ8IWR0 971 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 GRIN3AQ8TCU5 1115 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 DQX1Q8TE96 717 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 C19orf60Q96EN9 201 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 SLC29A1Q99808 456 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ZNF556Q9HAH1 456 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 VTA1Q9NP79 307 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 EHD3Q9NZN3 535 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 IFT80Q9P2H3 777 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 CYTH4Q9UIA0 394 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 BTBD3Q9Y2F9 522 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 PRG3Q9Y2Y8 225 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 A8MX80 341 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 H3BRB1 525 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 FBP2O00757 339 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 HTRA2O43464 458 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 DLX3O60479 287 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 SEC22BO75396 215 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ABCB1P08183 1280 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 PRKCQQ04759 706 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 EFEMP1Q12805 493 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 MRPL28Q13084 256 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 MSLNQ13421 630 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 ZBED5Q49AG3 693 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 FGD3Q5JSP0 725 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ZYG11AQ6WRX3 759 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 NECAB2Q7Z6G3 386 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 CLYBLQ8N0X4 340 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 B3GALNT2Q8NCR0 500 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 EXOC2Q96KP1 924 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 GPR63Q9BZJ6 419 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 TUT1Q9H6E5 874 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 PARVBQ9HBI1 364 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 SATB2Q9UPW6 733 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 EIF3LQ9Y262 564 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 CICQ96RK0 1608 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 NCAM2O15394 837 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 BDNFP23560 247 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 AZGP1P25311 298 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 SLC5A2P31639 672 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 INHBCP55103 352 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 FKBP1AP62942 108 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 ARHGEF7Q14155 803 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 ZNF846Q147U1 533 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 TJAP1Q5JTD0 557 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 AARS2Q5JTZ9 985 aaKnown RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 MAP1SQ66K74 1059 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 SCARA3Q6AZY7 606 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 PRMT9Q6P2P2 845 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 LCLAT1Q6UWP7 414 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 CENPNQ96H22 339 aaPredicted RBP13.55□□□□□ -0.24
USP42-206ENST00000479544 GIN1Q9NXP7 522 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 USE1Q9NZ43 259 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 CACNG4Q9UBN1 327 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 VPS51Q9UID3 782 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 SYNPO2Q9UMS6 1093 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 VWA7Q9Y334 891 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 NUMBLQ9Y6R0 609 aa13.55□□□□□ -0.24
USP42-206ENST00000479544 WNK3Q9BYP7 1800 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MAFO75444 373 aaPredicted RBP13.54□□□□□ -0.24
USP42-206ENST00000479544 IL7RP16871 459 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MATKP42679 507 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 NDST2P52849 883 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 UGT2A3Q6UWM9 527 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 CTU1Q7Z7A3 348 aaKnown RBP13.54□□□□□ -0.24
USP42-206ENST00000479544 MARVELD2Q8N4S9 558 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 PQLC3Q8N755 202 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 QKIQ96PU8 341 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP42-206ENST00000479544 CCNKO75909 580 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MYBPC1Q00872 1141 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 KYAT1Q16773 422 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 CNSTQ6PJW8 725 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 NAPRTQ6XQN6 538 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TOR3AQ9H497 397 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 OXSMQ9NWU1 459 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TUBGCP4Q9UGJ1 667 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 CDH9Q9ULB4 789 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TPRKBQ9Y3C4 175 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TMEM88BA6NKF7 163 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 E7ESA3 106 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 VPS26AO75436 327 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 DDNO94850 711 aaPredicted RBP13.54□□□□□ -0.24
USP42-206ENST00000479544 F9P00740 461 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MYCP01106 439 aaPredicted RBP13.54□□□□□ -0.24
USP42-206ENST00000479544 SLC2A3P11169 496 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 SLC7A1P30825 629 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MTHFRP42898 656 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MAGEA10P43363 369 aaPredicted RBP13.54□□□□□ -0.24
USP42-206ENST00000479544 SOWAHAQ2M3V2 549 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 RABL3Q5HYI8 236 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 C10orf120Q5SQS8 335 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TMEM74Q96NL1 305 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 TLL2Q9Y6L7 1015 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 MYO10Q9HD67 2058 aa13.54□□□□□ -0.24
USP42-206ENST00000479544 CROCCQ5TZA2 2017 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms