RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 USP45Q70EL2 814 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 TSPAN33Q86UF1 283 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 ZC3H18Q86VM9 953 aaKnown RBP15.63■□□□□ 0.09
HMGA1-206ENST00000478214 PARGQ86W56 976 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 LRRC8AQ8IWT6 810 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 SYCE1Q8N0S2 351 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 SLC25A45Q8N413 288 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 EID2Q8N6I1 236 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 PLA2G15Q8NCC3 412 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 IFT43Q96FT9 208 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 COQ10AQ96MF6 247 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 CDC6Q99741 560 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 OSBPL8Q9BZF1 889 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 GRPEL1Q9HAV7 217 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 PCDH9Q9HC56 1237 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 UCKL1Q9NWZ5 548 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 KLF15Q9UIH9 416 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 CAPN6Q9Y6Q1 641 aa15.63■□□□□ 0.09
HMGA1-206ENST00000478214 A0A0J9YYE9 177 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 APOC4-APOC2K7ER74 178 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 PIAS2O75928 621 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 TRBC1P01850 177 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 APOC2P02655 101 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 CSF2P04141 144 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 NME1P15531 152 aaKnown RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 CA4P22748 312 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 DGKAP23743 735 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 PTPN3P26045 913 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 PTPN7P35236 360 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 EPHB1P54762 984 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 WASHC5Q12768 1159 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 FOXC1Q12948 553 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 EIF2B5Q13144 721 aaKnown RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 ZNF211Q13398 564 aaPredicted RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 CCDC181Q5TID7 509 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 HSD11B1LQ7Z5J1 315 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 GLRX5Q86SX6 157 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 SLCO6A1Q86UG4 719 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 NDUFAF2Q8N183 169 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 CBARPQ8N350 705 aaPredicted RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 RNF10Q8N5U6 811 aaKnown RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 LPCAT1Q8NF37 534 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 IMP4Q96G21 291 aaKnown RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 QKIQ96PU8 341 aaKnown RBP eCLIP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 RBM15Q96T37 977 aaKnown RBP eCLIP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 SLC25A51Q9H1U9 297 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 GLOD4Q9HC38 313 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 PNMA8BQ9ULN7 279 aaPredicted RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 GUCA1BQ9UMX6 200 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 EFR3BQ9Y2G0 817 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 OR1A2Q9Y585 309 aa15.62■□□□□ 0.09
HMGA1-206ENST00000478214 TP53BP1Q12888 1972 aaPredicted RBP15.62■□□□□ 0.09
HMGA1-206ENST00000478214 GOLGA6L3A6NEY3 463 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 MIF4GDA9UHW6 222 aaKnown RBP15.61■□□□□ 0.09
HMGA1-206ENST00000478214 TOR1BO14657 336 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 DDX3YO15523 660 aaKnown RBP15.61■□□□□ 0.09
HMGA1-206ENST00000478214 TOP3BO95985 862 aaKnown RBP15.61■□□□□ 0.09
HMGA1-206ENST00000478214 ATXN1LP0C7T5 689 aaKnown RBP15.61■□□□□ 0.09
HMGA1-206ENST00000478214 FTH1P19P0C7X4 201 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 ETV3P41162 512 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 CETN2P41208 172 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 HNRNPKP61978 463 aaKnown RBP eCLIP15.61■□□□□ 0.091e-49■□□□□ 10.3
HMGA1-206ENST00000478214 CCZ1BP86790 482 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 CCZ1P86791 482 aaPredicted RBP15.61■□□□□ 0.09
HMGA1-206ENST00000478214 MTM1Q13496 603 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 ARHGEF7Q14155 803 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 PTK2BQ14289 1009 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 CRTC1Q6UUV9 634 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 MACC1Q6ZN28 852 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 PELI3Q8N2H9 469 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 UBL4BQ8N7F7 174 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 PNPLA1Q8N8W4 532 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 SPATA22Q8NHS9 363 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 ACTL9Q8TC94 416 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 TEKT5Q96M29 485 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 APOOQ9BUR5 198 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 TSGA10Q9BZW7 698 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 C10orf88Q9H8K7 445 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 FTSJ1Q9UET6 329 aa15.61■□□□□ 0.09
HMGA1-206ENST00000478214 HACD1B0YJ81 288 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 H7C0C1 242 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 TRIM38O00635 465 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 MTSS1O43312 755 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 TNFSF14O43557 240 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 KRT86O43790 486 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 LDOC1O95751 146 aaPredicted RBP15.6■□□□□ 0.09
HMGA1-206ENST00000478214 JUNDP17535 347 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 CD68P34810 354 aaPredicted RBP15.6■□□□□ 0.09
HMGA1-206ENST00000478214 ATP5OP48047 213 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 RPL26P61254 145 aaKnown RBP15.6■□□□□ 0.09
HMGA1-206ENST00000478214 OTUD4Q01804 1114 aaKnown RBP15.6■□□□□ 0.09
HMGA1-206ENST00000478214 NOMO1Q15155 1222 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 QPCTQ16769 361 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 LRRC66Q68CR7 880 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 RFLNAQ6ZTI6 216 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 NYAP1Q6ZVC0 841 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 Q6ZVL8 140 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 KDELC2Q7Z4H8 507 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 RBFAQ8N0V3 343 aa15.6■□□□□ 0.09
HMGA1-206ENST00000478214 HTR3CQ8WXA8 447 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms