RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 VSTM4Q8IW00 320 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 OR8K1Q8NGG5 319 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 MRPL40Q9NQ50 206 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 CTTNBP2NLQ9P2B4 639 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 UVRAGQ9P2Y5 699 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 RABGEF1Q9UJ41 708 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SMG1Q96Q15 3661 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SSU72P8A0A1W2PR75 194 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 CSO75390 466 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 HEXIM1O94992 359 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PGLSO95336 258 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 CPP00450 1065 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 FUCA1P04066 466 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ITPKBP27987 946 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SERPINB6P35237 376 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 EIF2S3P41091 472 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 SSR1P43307 286 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 DUSP3P51452 185 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PDX1P52945 283 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 KIAA1024LP59773 190 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 POLR2LP62875 67 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 GBE1Q04446 702 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 NR0B2Q15466 257 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 FAM182AQ5T1J6 154 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 MARC1Q5VT66 337 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ESRP1Q6NXG1 681 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 HSD11B1LQ7Z5J1 315 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 KYQ8NBH2 561 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PTCD2Q8WV60 388 aaKnown RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PIH1D2Q8WWB5 315 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 RAPGEF5Q92565 580 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 WDR92Q96MX6 357 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 MCCC1Q96RQ3 725 aaPredicted RBP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 RBM15Q96T37 977 aaKnown RBP eCLIP14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ZNF670Q9BS34 389 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 NT5MQ9NPB1 228 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 ABHD10Q9NUJ1 306 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 PPIL1Q9Y3C6 166 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 AK5Q9Y6K8 562 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 DGKBQ9Y6T7 804 aa14.14□□□□□ -0.15
UPF3A-204ENST00000475218 KIF26BQ2KJY2 2108 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 KALRNO60229 2985 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 PMS2P1A4D2B8 440 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 RASGRP1O95267 797 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 ANXA6P08133 673 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 HOXC4P09017 264 aaPredicted RBP14.13□□□□□ -0.15
UPF3A-204ENST00000475218 H2AFZP0C0S5 128 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 TMEM253P0C7T8 217 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 PTMSP20962 102 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 VIPR1P32241 457 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 ALG1LQ6GMV1 187 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 PNCKQ6P2M8 343 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 H2AFVQ71UI9 128 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 RD3Q7Z3Z2 195 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 PDZD3Q86UT5 571 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 MAPK15Q8TD08 544 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 PDCD6IPQ8WUM4 868 aaKnown RBP14.13□□□□□ -0.15
UPF3A-204ENST00000475218 TSGA13Q96PP4 275 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 SPTLC3Q9NUV7 552 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 KLQ9UEF7 1012 aa14.13□□□□□ -0.15
UPF3A-204ENST00000475218 C3orf70A6NLC5 250 aaPredicted RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 MFAP3LO75121 409 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 MPOP05164 745 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 ALPIP09923 528 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 MAN1A1P33908 653 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 DSC2Q02487 901 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 ACOX1Q15067 660 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 HADHQ16836 314 aaKnown RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 ISXQ2M1V0 245 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 SKOR2Q2VWA4 1001 aaPredicted RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 FSTL5Q8N475 847 aaPredicted RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 RNF214Q8ND24 703 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 OR56A4Q8NGH8 313 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 CCL4L1Q8NHW4 92 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 SNIP1Q8TAD8 396 aaKnown RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 ARRDC2Q8TBH0 407 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 CTNNBL1Q8WYA6 563 aaPredicted RBP14.12□□□□□ -0.15
UPF3A-204ENST00000475218 FATE1Q969F0 183 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 DTD2Q96FN9 168 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 SCRN2Q96FV2 425 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 DCBLD2Q96PD2 775 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 DEPDC7Q96QD5 511 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 SEMA3CQ99985 751 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 NCKIPSDQ9NZQ3 722 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 SIRPGQ9P1W8 387 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 PADI4Q9UM07 663 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 PHTF1Q9UMS5 762 aa14.12□□□□□ -0.15
UPF3A-204ENST00000475218 MATN3O15232 486 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 USP12O75317 370 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 SOD1P00441 154 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 PRLP01236 227 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 CTPS1P17812 591 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 HTR1BP28222 390 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ETV3P41162 512 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 BLKP51451 505 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 NIPAL4Q0D2K0 466 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 TBX2Q13207 712 aaPredicted RBP14.11□□□□□ -0.15
UPF3A-204ENST00000475218 PDK2Q15119 407 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 ELOCQ15369 112 aa14.11□□□□□ -0.15
UPF3A-204ENST00000475218 RALGPS1Q5JS13 557 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms