RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 DEPDC7Q96QD5 511 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 MGME1Q9BQP7 344 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 NOD2Q9HC29 1040 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 NT5MQ9NPB1 228 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 NCKIPSDQ9NZQ3 722 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 RCOR3Q9P2K3 495 aaPredicted RBP15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 B4GALT6Q9UBX8 382 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 KLQ9UEF7 1012 aa15.78■□□□□ 0.12
CCDC88B-205ENST00000472524 CFAP69A5D8W1 941 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 YY2O15391 372 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SOCS5O75159 536 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 PROSCO94903 275 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 MAP3K6O95382 1288 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 H2AFZP0C0S5 128 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 CR2P20023 1033 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 IL4RP24394 825 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 HNRNPH3P31942 346 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 HK3P52790 923 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 TAS2R40P59535 323 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SRP54P61011 504 aaKnown RBP15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 TRAF2Q12933 501 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 TRIM14Q14142 442 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SLC18A3Q16572 532 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 MARC1Q5VT66 337 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 DENND2CQ68D51 928 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SPECC1LQ69YQ0 1117 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 H2AFVQ71UI9 128 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SLC35F3Q8IY50 421 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 KCTD6Q8NC69 237 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 ATL2Q8NHH9 583 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 PDXPQ96GD0 296 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 BOCQ9BWV1 1114 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 TSPY26PQ9H489 355 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 SIRPGQ9P1W8 387 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 UVRAGQ9P2Y5 699 aa15.77■□□□□ 0.12
CCDC88B-205ENST00000472524 EME2A4GXA9 379 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 TK2O00142 265 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 CACNB4O00305 520 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 HTRA2O43464 458 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 CSO75390 466 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 GM2AP17900 193 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 TGM2P21980 687 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 VIPR1P32241 457 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 RPIAP49247 311 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 ARSEP51690 589 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 CXADRP78310 365 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 GABREP78334 506 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 ITKQ08881 620 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 ELOCQ15369 112 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 CNGA3Q16281 694 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 PERM1Q5SV97 790 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 ZFYVE27Q5T4F4 411 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 KCTD16Q68DU8 428 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 NCBP2-AS2Q69YL0 99 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 PCSK4Q6UW60 755 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 GPR155Q7Z3F1 870 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 FSTL5Q8N475 847 aaPredicted RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 RNF214Q8ND24 703 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 OR8K1Q8NGG5 319 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 PCDH19Q8TAB3 1148 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 FAM71BQ8TC56 605 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 FUBP1Q96AE4 644 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 HIC2Q96JB3 615 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 DNAJC7Q99615 494 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 SYNDIG1Q9H7V2 258 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 ZNHIT6Q9NWK9 470 aaKnown RBP15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 GULP1Q9UBP9 304 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 PTPRQQ9UMZ3 2332 aa15.76■□□□□ 0.11
CCDC88B-205ENST00000472524 A0A1W2PQ67 120 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 TMEM202A6NGA9 273 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 AKR1B10O60218 316 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 USP12O75317 370 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 TNFP01375 233 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 TPM1P09493 284 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 ALPIP09923 528 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 GARSP41250 739 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 KIAA1024LP59773 190 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 MESDQ14696 234 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 TSR1Q2NL82 804 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 ANKRD20A8PQ5CZ79 823 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 ESRP1Q6NXG1 681 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 PELI3Q8N2H9 469 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 KYQ8NBH2 561 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 OR1E3Q8WZA6 343 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 NUS1Q96E22 293 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 LGMNQ99538 433 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 SEMA3CQ99985 751 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 ZNF670Q9BS34 389 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 MRPL40Q9NQ50 206 aaKnown RBP15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 MOSPD1Q9UJG1 213 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 PHTF1Q9UMS5 762 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 TTLL3Q9Y4R7 772 aa15.75■□□□□ 0.11
CCDC88B-205ENST00000472524 SSU72P8A0A1W2PR75 194 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GOLGA6CA6NDK9 693 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GOLGA6BA6NDN3 693 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 HEXIM1O94992 359 aaKnown RBP15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 PGLSO95336 258 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 KRT7P08729 469 aa15.74■□□□□ 0.11
CCDC88B-205ENST00000472524 GOLGA6DP0CG33 693 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms