RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 TUFMP49411 452 aaKnown RBP13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 KLF10Q13118 480 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 SEMA3BQ13214 749 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 GPR17Q13304 367 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 TMCO4Q5TGY1 634 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 NADSYN1Q6IA69 706 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 MFSD6LQ8IWD5 586 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 MIER2Q8N344 545 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 AFAP1L2Q8N4X5 818 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 OR4L1Q8NH43 312 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 PXYLP1Q8TE99 480 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 CMTM5Q96DZ9 223 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 ZNF558Q96NG5 402 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 ZDHHC6Q9H6R6 413 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 MARCH5Q9NX47 278 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 EGFL7Q9UHF1 273 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 CRLS1Q9UJA2 301 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 SPO11Q9Y5K1 396 aa13.77□□□□□ -0.2
CCDC88A-211ENST00000471947 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 INSIG1O15503 277 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 KLHL2O95198 593 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 PSMC3P17980 439 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 EPHB3P54753 998 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 CYLC2Q14093 348 aaPredicted RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 BOP1Q14137 746 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 FLOT2Q14254 428 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 CAPRIN1Q14444 709 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 LIPMQ5VYY2 423 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 CPNE9Q8IYJ1 553 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 ZNF276Q8N554 614 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 SPDL1Q96EA4 605 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 NAF1Q96HR8 494 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 C7orf26Q96N11 449 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 SEPT3Q9UH03 358 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 YIPF1Q9Y548 306 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 CDC7O00311 574 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 PSMD3O43242 534 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 DNAJA2O60884 412 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 DHRS4L1P0CG22 281 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 AGTR2P50052 363 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 IL1RL1Q01638 556 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 ARHGEF6Q15052 776 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 POTEHQ6S545 545 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 LRRC43Q8N309 656 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 CALML6Q8TD86 181 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 HCFC1R1Q9NWW0 138 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 TRMT6Q9UJA5 497 aaKnown RBP13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 PPM1HQ9ULR3 514 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 ARHGAP26Q9UNA1 814 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 PKP3Q9Y446 797 aa13.77□□□□□ -0.21
CCDC88A-211ENST00000471947 OR6C75A6NL08 312 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 ENO4A6NNW6 628 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 HDAC3O15379 428 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 TOMM70O94826 608 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 LTA4HP09960 611 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 TSHRP16473 764 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 PIK3R1P27986 724 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CSKP41240 450 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 HSPA14Q0VDF9 509 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 C18orf21Q32NC0 220 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 LHX8Q68G74 356 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 SUGP1Q8IWZ8 645 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CENPLQ8N0S6 344 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 SKA1Q96BD8 255 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CASD1Q96PB1 797 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 PCDHAC1Q9H158 963 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 COPS7BQ9H9Q2 264 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 PRKAG2Q9UGJ0 569 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 MID2Q9UJV3 735 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 KIF3CO14782 793 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CXCL14O95715 111 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 GDF5P43026 501 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 NTHL1P78549 312 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 TMEM154Q6P9G4 183 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 DOCK6Q96HP0 2047 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 UBDO15205 165 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 OAZ2O95190 189 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 SERPINA6P08185 405 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 MAGEA3P43357 314 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 AP2B1P63010 937 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 NRG1Q02297 640 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 SCAPQ12770 1279 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 HSF5Q4G112 596 aaPredicted RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 MAVSQ7Z434 540 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CUZD1Q86UP6 607 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 CLHC1Q8NHS4 586 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 NUDT8Q8WV74 236 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 UCMAQ8WVF2 138 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 GCNAQ96QF7 691 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 SORT1Q99523 831 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 TUBB6Q9BUF5 446 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 ASB8Q9H765 288 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 THEGQ9P2T0 379 aa13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 GMPR2Q9P2T1 348 aaKnown RBP13.76□□□□□ -0.21
CCDC88A-211ENST00000471947 NEDD8-MDP1E9PL57 170 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 C1QAP02745 245 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 KCNC1P48547 511 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 PPM1FP49593 454 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 ARHGEF7Q14155 803 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 NRF1Q16656 503 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms