RNA–Protein interactions for RNA: ENST00000468925.1

SF3B1-207, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 510 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-207ENST00000468925 MERTKQ12866 999 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 STX5Q13190 355 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 KLF1Q13351 362 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ART3Q13508 389 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TFDP1Q14186 410 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TRIM25Q14258 630 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 INPP5AQ14642 412 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MESDQ14696 234 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CBX2Q14781 532 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DRAP1Q14919 205 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ACAP1Q15027 740 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PDK2Q15119 407 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TAF5Q15542 800 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CCDC85BQ15834 202 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CALCRLQ16602 461 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 AOC3Q16853 763 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 SHROOM1Q2M3G4 852 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 SLC36A3Q495N2 470 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TEX44Q53QW1 395 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PIGGQ5H8A4 983 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 NHSL2Q5HYW2 709 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 RPS26P11Q5JNZ5 115 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 FGD3Q5JSP0 725 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MROH9Q5TGP6 573 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PDPK2PQ6A1A2 396 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 IL31Q6EBC2 164 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 GTF2IRD2BQ6EKJ0 949 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 LETMD1Q6P1Q0 360 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PRMT9Q6P2P2 845 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 GGT6Q6P531 493 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ZNF530Q6P9A1 599 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MAMDC4Q6UXC1 1216 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CCBE1Q6UXH8 406 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 HACD2Q6Y1H2 254 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DBX2Q6ZNG2 339 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 RFX8Q6ZV50 586 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 KCTD8Q6ZWB6 473 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 COPS6Q7L5N1 327 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ENOSF1Q7L5Y1 443 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 UBE3DQ7Z6J8 389 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ADAT2Q7Z6V5 191 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 LINC00523Q86TU6 105 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 GTF2IRD2Q86UP8 949 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PDZD3Q86UT5 571 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 AQP12AQ8IXF9 295 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CPXCR1Q8N123 301 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ARL6IP6Q8N6S5 226 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 KCNH5Q8NCM2 988 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ZSWIM2Q8NEG5 633 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 FLAD1Q8NFF5 587 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 RHOXF1Q8NHV9 184 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 BRSK1Q8TDC3 778 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 GPBAR1Q8TDU6 330 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 XAGE3Q8WTP9 111 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TGFBRAP1Q8WUH2 860 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DCAKDQ8WVC6 231 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 IP6K1Q92551 441 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PIK3R3Q92569 461 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 NKD2Q969F2 451 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PPWD1Q96BP3 646 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 OMA1Q96E52 524 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PDXPQ96GD0 296 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 VCPIP1Q96JH7 1222 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 SLC45A3Q96JT2 553 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CLPTM1LQ96KA5 538 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DACH2Q96NX9 599 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 OPALINQ96PE5 141 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ASB2Q96Q27 587 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CPXM1Q96SM3 734 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 SORT1Q99523 831 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 C17orf62Q9BQA9 187 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TMEM121Q9BTD3 319 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DUSP23Q9BVJ7 150 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 NUP85Q9BW27 656 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 CALN1Q9BXU9 219 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 SLC13A1Q9BZW2 595 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TRIT1Q9H3H1 467 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 NIPAL2Q9H841 368 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 COPS7BQ9H9Q2 264 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 POLR1BQ9H9Y6 1135 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ZNF556Q9HAH1 456 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MRM3Q9HC36 420 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MRPL47Q9HD33 250 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 NGRNQ9NPE2 291 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ANLNQ9NQW6 1124 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 BLOC1S4Q9NUP1 217 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MTRRQ9UBK8 725 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 APEX2Q9UBZ4 518 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 DCDC2Q9UHG0 476 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 VPS51Q9UID3 782 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ZMYM5Q9UJ78 669 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TRMT6Q9UJA5 497 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 AGO2Q9UKV8 859 aaKnown RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 TRPC5Q9UL62 973 aaPredicted RBP4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PCDHA6Q9UN73 950 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 GTF2A1LQ9UNN4 478 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 MAPRE3Q9UPY8 281 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 ZNF175Q9Y473 711 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PCDHA8Q9Y5H6 950 aa4.88□□□□□ -1.63
SF3B1-207ENST00000468925 PCDHA2Q9Y5H9 948 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms