RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 SLC6A4P31645 630 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 MRPS22P82650 360 aaKnown RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TIAL1Q01085 375 aaKnown RBP eCLIP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 ZNF235Q14590 738 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 RTP2Q5QGT7 225 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 CHSY3Q70JA7 882 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 GALNT7Q86SF2 657 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 LGI2Q8N0V4 545 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 RYBPQ8N488 228 aaPredicted RBP8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TUBGCP5Q96RT8 1024 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 MEAF6Q9HAF1 191 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 MARCH5Q9NX47 278 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM161AQ9NX61 479 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 ZDHHC7Q9NXF8 308 aa8.97□□□□□ -0.97
SYNE1-217ENST00000466159 ATP6AP2A0A1C7CYW4 349 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 CD3EAPO15446 510 aaKnown RBP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 ATP6AP2O75787 350 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 GLP2RO95838 553 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 ALDH2P05091 517 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 IMPDH1P20839 514 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 FGFR3P22607 806 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 PEX19P40855 299 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 SLC11A1P49279 550 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 CDH13P55290 713 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 YBEYP58557 167 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 SATB1Q01826 763 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 GPR17Q13304 367 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 GRAMD1BQ3KR37 738 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 ARMC3Q5W041 872 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 IL31Q6EBC2 164 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 CYHR1Q6ZMK1 362 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 TAS1R1Q7RTX1 841 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 TMEM173Q86WV6 379 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 SLC22A9Q8IVM8 553 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 PQLC1Q8N2U9 271 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 PCDH20Q8N6Y1 951 aaKnown RBP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 BHLHE22Q8NFJ8 381 aaPredicted RBP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 OR7D4Q8NG98 312 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 NSMCE3Q96MG7 304 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.96□□□□□ -0.97
SYNE1-217ENST00000466159 PDFQ9HBH1 243 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 TRPC7Q9HCX4 862 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 CCDC167Q9P0B6 97 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 VPS28Q9UK41 221 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 PSMD13Q9UNM6 376 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 TRAF6Q9Y4K3 522 aa8.96□□□□□ -0.97
SYNE1-217ENST00000466159 TET1Q8NFU7 2136 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 CASP8AP2Q9UKL3 1982 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 PPP6CO00743 305 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 ENPP3O14638 875 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 CASQ2O14958 399 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 UBDO15205 165 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 SNUPNO95149 360 aaKnown RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 HSPA1AP0DMV8 641 aaKnown RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 HSPA1BP0DMV9 641 aaKnown RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 UQCRBP14927 111 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 CD1DP15813 335 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FDXRP22570 491 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 ME2P23368 584 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 ALDH1A3P47895 512 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 MAPKAPK2P49137 400 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 ACVR1Q04771 509 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 RING1Q06587 406 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 UNC50Q53HI1 259 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 ZNF678Q5SXM1 525 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FOXB2Q5VYV0 432 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FAM45BPQ6NSW5 357 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 PRSS55Q6UWB4 352 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 DBF4BQ8NFT6 615 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FAM45AQ8TCE6 357 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 BRSK1Q8TDC3 778 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FEM1CQ96JP0 617 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 FAR2Q96K12 515 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 CASD1Q96PB1 797 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 VCX3BQ9H321 246 aa8.96□□□□□ -0.98
SYNE1-217ENST00000466159 POLR3BQ9NW08 1133 aaPredicted RBP8.96□□□□□ -0.98
SYNE1-217ENST00000466159 CHD5Q8TDI0 1954 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 CAPN8A6NHC0 703 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 LRRC14BA6NHZ5 514 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 F5H5T6 163 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 NBNO60934 754 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 GPC4O75487 556 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SIX3O95343 332 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 FGF1P05230 155 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ZDHHC11BP0C7U3 371 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 VCLP18206 1134 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 ATF6P18850 670 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 HLA-DPA1P20036 260 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 HOXD9P28356 352 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 RGRP47804 291 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 FASTKQ14296 549 aaKnown RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 AGKQ53H12 422 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 OGFRL1Q5TC84 451 aaPredicted RBP8.95□□□□□ -0.98
SYNE1-217ENST00000466159 FUT10Q6P4F1 479 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 EXOC2Q96KP1 924 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SPATA17Q96L03 361 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 C3orf30Q96M34 536 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SMIM14Q96QK8 99 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 SPON2Q9BUD6 331 aa8.95□□□□□ -0.98
SYNE1-217ENST00000466159 MRPL1Q9BYD6 325 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms