RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CATSPEREQ5SY80 951 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 KIAA1841Q6NSI8 718 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RINT1Q6NUQ1 792 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CASC4Q6P4E1 433 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SHISA2Q6UWI4 295 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 KBTBD6Q86V97 674 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MAPKAPK5Q8IW41 473 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ELMOD1Q8N336 334 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CPSF7Q8N684 471 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF655Q8N720 491 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PI4KAP1Q8N8J0 262 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SNX31Q8N9S9 440 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FANCBQ8NB91 859 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 DAGLBQ8NCG7 672 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SRFBP1Q8NEF9 429 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ETNPPLQ8TBG4 499 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PTERQ96BW5 349 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SORBS1Q9BX66 1292 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 STRA6Q9BX79 667 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 BCL2L14Q9BZR8 327 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 AP5M1Q9H0R1 490 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TMEM245Q9H330 911 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CFAP97Q9P2B7 532 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 DNAJB9Q9UBS3 223 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 IPO11Q9UI26 975 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TCFL5Q9UL49 500 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GINS2Q9Y248 185 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ANKRD36CQ5JPF3 1778 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A0U1RQJ8 604 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 LOC100506127A0A0U1RQW1 187 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SERTM2A0A1B0GWG4 89 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 GSTTP1A0A1W2PQM5 241 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 AHRRA9YTQ3 701 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 E9PBE3 544 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ATP6V1G2-DDX39BF2Z307 99 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 H0YAE9 185 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 H7C0C1 242 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 BET1O15155 118 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MYO1DO94832 1006 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CELF2O95319 508 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 IGKV5-2P06315 115 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CAPN1P07384 714 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CHRM5P08912 532 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 DHRS4L1P0CG22 281 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ITGAXP20702 1163 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CYP7A1P22680 504 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PDHA2P29803 388 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MC4RP32245 332 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 GSSP48637 474 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC9A3P48764 834 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC7A2P52569 658 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 NKX2-5P52952 324 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 RPL11P62913 178 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 YWHAZP63104 245 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF543Q08ER8 600 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 KCNAB1Q14722 419 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 NPTX1Q15818 432 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CHRNA6Q15825 494 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 TBRG1Q3YBR2 411 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CRY2Q49AN0 593 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CCDC58Q4VC31 144 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF805Q5CZA5 627 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 HERC4Q5GLZ8 1057 aaPredicted RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 TMEM31Q5JXX7 168 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SFRP5Q5T4F7 317 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ANKRD20A1Q5TYW2 823 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MBNL2Q5VZF2 373 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CST9Q5W186 159 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PLA2G4FQ68DD2 849 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PTRHD1Q6GMV3 140 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC22A25Q6T423 547 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF765Q7L2R6 523 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CPLX4Q7Z7G2 160 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CHD1LQ86WJ1 897 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 FBXO11Q86XK2 927 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MIB1Q86YT6 1006 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 GPC2Q8N158 579 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 BBS5Q8N3I7 341 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 FBXW8Q8N3Y1 598 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 KLHL36Q8N4N3 616 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF366Q8N895 744 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 BANPQ8N9N5 519 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CNNM3Q8NE01 707 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MCPH1Q8NEM0 835 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ZMIZ2Q8NF64 920 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC24A4Q8NFF2 622 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PANK1Q8TE04 598 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 NRG4Q8WWG1 115 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 ATP2A3Q93084 1043 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 STAMBPL1Q96FJ0 436 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 MASTLQ96GX5 879 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 DNAJC1Q96KC8 554 aaKnown RBP4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 USP28Q96RU2 1077 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 CTRCQ99895 268 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SH3GL2Q99962 352 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 SPXQ9BT56 116 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 PLEKHA4Q9H4M7 779 aa4.84□□□□□ -1.63
CCDC88A-209ENST00000456975 EPB41L5Q9HCM4 733 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms