RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TC2NQ8N9U0 490 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 TRAF3IP1Q8TDR0 691 aaPredicted RBP21.28■■□□□ 1
HMGB3-205ENST00000455596 GLMNQ92990 594 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 TSACCQ96A04 125 aaPredicted RBP21.28■■□□□ 1
HMGB3-205ENST00000455596 COQ10AQ96MF6 247 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 ZNF830Q96NB3 372 aaPredicted RBP21.28■■□□□ 1
HMGB3-205ENST00000455596 RBM22Q9NW64 420 aaKnown RBP eCLIP21.28■■□□□ 1
HMGB3-205ENST00000455596 KCTD5Q9NXV2 234 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 CLCA2Q9UQC9 943 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 RAI2Q9Y5P3 530 aa21.28■■□□□ 1
HMGB3-205ENST00000455596 KNTC1P50748 2209 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 LMO7DNF2Z398 122 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 CACNB4O00305 520 aaPredicted RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 HEXIM1O94992 359 aaKnown RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 TSHRP16473 764 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 SLC1A1P43005 524 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 SRP54P61011 504 aaKnown RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 CYP4F3Q08477 520 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 SLC10A2Q12908 348 aaPredicted RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 ELOCQ15369 112 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 ODF2Q5BJF6 829 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 ALG1LQ6GMV1 187 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 ESRP1Q6NXG1 681 aaKnown RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 USP45Q70EL2 814 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 RD3Q7Z3Z2 195 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 CCDC13Q8IYE1 715 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 CCNYQ8ND76 341 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 IFI44Q8TCB0 444 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 NUS1Q96E22 293 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 SCRN2Q96FV2 425 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 MAK16Q9BXY0 300 aaKnown RBP21.27■■□□□ 1
HMGB3-205ENST00000455596 CLPBQ9H078 707 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 DTLQ9NZJ0 730 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 DOLKQ9UPQ8 538 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 PPIL1Q9Y3C6 166 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 TTLL3Q9Y4R7 772 aa21.27■■□□□ 1
HMGB3-205ENST00000455596 IGF2RP11717 2491 aa21.27■□□□□ 0.99
HMGB3-205ENST00000455596 NPIPB15A6NHN6 443 aaPredicted RBP21.26■□□□□ 0.99
HMGB3-205ENST00000455596 PSMD11O00231 422 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 TNFP01375 233 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 KRT1P04264 644 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 ALPIP09923 528 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 KRT10P13645 584 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 KELP23276 732 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 TRIM23P36406 574 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 KIAA1024LP59773 190 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 DSC2Q02487 901 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 ARHGEF7Q14155 803 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 NR0B2Q15466 257 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 CDKN3Q16667 212 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 C6orf132Q5T0Z8 1188 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 LRRC38Q5VT99 294 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 DENND2CQ68D51 928 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 PNCKQ6P2M8 343 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 RHOT1Q8IXI2 618 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 SDR16C5Q8N3Y7 309 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP21.26■□□□□ 0.99
HMGB3-205ENST00000455596 PLD5Q8N7P1 536 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 TPCN2Q8NHX9 752 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 LRRN4Q8WUT4 740 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 PIH1D2Q8WWB5 315 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 FUBP1Q96AE4 644 aaKnown RBP21.26■□□□□ 0.99
HMGB3-205ENST00000455596 NXPE2Q96DL1 559 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 BOCQ9BWV1 1114 aa21.26■□□□□ 0.99
HMGB3-205ENST00000455596 DDX56Q9NY93 547 aaKnown RBP21.26■□□□□ 0.99
HMGB3-205ENST00000455596 COL27A1Q8IZC6 1860 aaPredicted RBP21.26■□□□□ 0.99
HMGB3-205ENST00000455596 C3orf70A6NLC5 250 aaPredicted RBP21.25■□□□□ 0.99
HMGB3-205ENST00000455596 APOL1O14791 398 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 YY2O15391 372 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 OPA1O60313 960 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 FZD6O60353 706 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 MT-CO3P00414 261 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 HLA-DQB2P05538 268 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 PDHA1P08559 390 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 HOXC4P09017 264 aaPredicted RBP21.25■□□□□ 0.99
HMGB3-205ENST00000455596 CTPS1P17812 591 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 CA4P22748 312 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 LHCGRP22888 699 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 MAGEA1P43355 309 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 RPIAP49247 311 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 SLC9A4Q6AI14 798 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 DCBLD1Q8N8Z6 715 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 OR56A4Q8NGH8 313 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 SCG3Q8WXD2 468 aaKnown RBP21.25■□□□□ 0.99
HMGB3-205ENST00000455596 MCCC1Q96RQ3 725 aaPredicted RBP21.25■□□□□ 0.99
HMGB3-205ENST00000455596 NRSN2Q9GZP1 204 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 ABCG4Q9H172 646 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 WDR26Q9H7D7 661 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 HEY1Q9Y5J3 304 aa21.25■□□□□ 0.99
HMGB3-205ENST00000455596 RP1P56715 2156 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 ADAMTS20P59510 1910 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 CPED1A4D0V7 1026 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 EME2A4GXA9 379 aaPredicted RBP21.24■□□□□ 0.99
HMGB3-205ENST00000455596 SPOPO43791 374 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 CELA2BP08218 269 aaPredicted RBP21.24■□□□□ 0.99
HMGB3-205ENST00000455596 TNNT1P13805 278 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 ZFXP17010 805 aaPredicted RBP21.24■□□□□ 0.99
HMGB3-205ENST00000455596 COMTP21964 271 aa21.24■□□□□ 0.99
HMGB3-205ENST00000455596 NOP2P46087 812 aaKnown RBP21.24■□□□□ 0.99
HMGB3-205ENST00000455596 EPHB1P54762 984 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms