RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PTPRUQ92729 1446 aa4.34□□□□□ -1.71
VPS29-202ENST00000447578 KNDC1Q76NI1 1749 aa4.34□□□□□ -1.71
VPS29-202ENST00000447578 OVOS2A0A0J9YW53 1432 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 PTCH1Q13635 1447 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 OVOS2Q6IE36 1432 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ABCC4O15439 1325 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 A0A1W2PQ09 198 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 A0A1W2PQM1 296 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 FAM170AA1A519 330 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 H7C0S8 307 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 CEP104O60308 925 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 HBP1O60381 514 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 NR2F1P10589 423 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 GJC1P36383 396 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 PBX3P40426 434 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 EIF2DP41214 584 aaKnown RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 STAT6P42226 847 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ME1P48163 572 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 VPS41P49754 854 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 WDR5P61964 334 aaKnown RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 YPEL5P62699 121 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 OLR1P78380 273 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 B4GALNT1Q00973 533 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ROR1Q01973 937 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 CFHR3Q02985 330 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 RASA2Q15283 850 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 GSTA3Q16772 222 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 PLEKHS1Q5SXH7 462 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 NCEH1Q6PIU2 408 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 DCDC5Q6ZRR9 648 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 COLCA1Q6ZS62 124 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 MCM10Q7L590 875 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 RNF144BQ7Z419 303 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 PRPF39Q86UA1 669 aaKnown RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 ANKRD13BQ86YJ7 626 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ADGRF3Q8IZF5 1079 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 LINC01465Q8N7H1 131 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 HSPH1Q92598 858 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ARHGAP45Q92619 1136 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 INTS12Q96CB8 462 aaKnown RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 CNDP2Q96KP4 475 aaKnown RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 LYZL4Q96KX0 146 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 HS6ST2Q96MM7 605 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 SLCO3A1Q9UIG8 710 aa4.33□□□□□ -1.72
VPS29-202ENST00000447578 ZHX1Q9UKY1 873 aaPredicted RBP4.33□□□□□ -1.72
VPS29-202ENST00000447578 MON2Q7Z3U7 1717 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 UBR1Q8IWV7 1749 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 MAP3K19Q56UN5 1328 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TTC21AQ8NDW8 1320 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 C17orf113A0A1B0GUU1 675 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 FRMD3A2A2Y4 597 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 EIF3CLB5ME19 914 aaKnown RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 CLIC1O00299 241 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 BCAT2O15382 392 aaPredicted RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 STRNO43815 780 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TACC1O75410 805 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 PGM3O95394 542 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TOMM40O96008 361 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 GALTP07902 379 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 CTSAP10619 480 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 VDRP11473 427 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 GLULP15104 373 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 IL11P20809 199 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 CD72P21854 359 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 FMO4P31512 558 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 DPP6P42658 865 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 AMPHP49418 695 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ADPRHP54922 357 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ZBED6P86452 979 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 SRSF1Q07955 248 aaKnown RBP eCLIP4.32□□□□□ -1.72
VPS29-202ENST00000447578 SEMA3AQ14563 771 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 KRT24Q2M2I5 525 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TMEM266Q2M3C6 531 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 FBXO43Q4G163 708 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 BMP2KLQ5H9B9 411 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ZNF667Q5HYK9 610 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 RPUSD3Q6P087 351 aaKnown RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 TMEM154Q6P9G4 183 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 DEF8Q6ZN54 512 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 SLC46A3Q7Z3Q1 461 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TADA2BQ86TJ2 420 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 PIM3Q86V86 326 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ADGRF2Q8IZF7 708 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 GHDCQ8N2G8 530 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 CPXM2Q8N436 756 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 TMEM116Q8NCL8 245 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 C11orf65Q8NCR3 313 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 DNAAF1Q8NEP3 725 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ABHD14AQ9BUJ0 271 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 HEMGNQ9BXL5 484 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 CADM1Q9BY67 442 aaKnown RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 RNF26Q9BY78 433 aaPredicted RBP4.32□□□□□ -1.72
VPS29-202ENST00000447578 TRIM2Q9C040 744 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 HIPK2Q9H2X6 1198 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 SH2D4AQ9H788 454 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 MRGBPQ9NV56 204 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 ASNSD1Q9NWL6 643 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 BABAM1Q9NWV8 329 aa4.32□□□□□ -1.72
VPS29-202ENST00000447578 HDAC6Q9UBN7 1215 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 216.1 ms