RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 MAMSTRQ6ZN01 415 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NANOGNBQ7Z5D8 188 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SRRM1Q8IYB3 904 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 UNC5BQ8IZJ1 945 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NAT16Q8N8M0 369 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RIPOR3Q96MK2 946 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TM6SF2Q9BZW4 377 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 MRM3Q9HC36 420 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SMYD2Q9NRG4 433 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CLDND1Q9NY35 253 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CLEC1BQ9P126 229 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SLC25A13Q9UJS0 675 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ZNF180Q9UJW8 692 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ACTL7BQ9Y614 415 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 HOXC11O43248 304 aaPredicted RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SMAD6O43541 496 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 KRT37O76014 449 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NMBRP28336 390 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 MAPK8P45983 427 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ITIH4Q14624 930 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 PDGFRLQ15198 375 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 LRIT3Q3SXY7 679 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 FAAH2Q6GMR7 532 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 DUS1LQ6P1R4 473 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TMEM154Q6P9G4 183 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 MARK2Q7KZI7 788 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TRABD2AQ86V40 505 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ATP2A3Q93084 1043 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 E2F7Q96AV8 911 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RPL10LQ96L21 214 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ZNF778Q96MU6 729 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RANBP9Q96S59 729 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TDRD1Q9BXT4 1180 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TBCCD1Q9NVR7 557 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TXNDC16Q9P2K2 825 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CHKBQ9Y259 395 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 HS3ST2Q9Y278 367 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 PCDHGC4Q9Y5F7 938 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RAI2Q9Y5P3 530 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 COMMD3-BMI1R4GMX3 469 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CCDC78A2IDD5 438 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CCDC162PA2VCL2 907 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 PFDN1O60925 122 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ERVK-10P10266 1014 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SRCP12931 536 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 PAMP19021 973 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 GALNT3Q14435 633 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RCN1Q15293 331 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ATXN7L2Q5T6C5 722 aaPredicted RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TANGO2Q6ICL3 276 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NCEH1Q6PIU2 408 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RASSF3Q86WH2 238 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 AHI1Q8N157 1196 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 RMDN1Q96DB5 314 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TRIB3Q96RU7 358 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 SELENOSQ9BQE4 189 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 OSBPL10Q9BXB5 764 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ADGRE3Q9BY15 652 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 S1PR5Q9H228 398 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CNOT10Q9H9A5 744 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 C20orf96Q9NUD7 363 aaPredicted RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 PRKAG3Q9UGI9 489 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TBX10O75333 385 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 IGSF6O95976 241 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 BRAFP15056 766 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ARSAP15289 507 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 POLR2EP19388 210 aaKnown RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 FCARP24071 287 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 MTHFRP42898 656 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 CTSOP43234 321 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 DGKGP49619 791 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 SERPINB9P50453 376 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 CLCN2P51788 898 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ARPC4P59998 168 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ECT2LQ008S8 904 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 DLX2Q07687 328 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 CTC1Q2NKJ3 1217 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ZNF362Q5T0B9 420 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 MBLAC2Q68D91 279 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 PDPK2PQ6A1A2 396 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 NLRP9Q7RTR0 991 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 KCNMB4Q86W47 210 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 PDCD6IPQ8WUM4 868 aaKnown RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ASIC4Q96FT7 647 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 ZFYVE19Q96K21 471 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 NSMCE3Q96MG7 304 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 NR1H4Q96RI1 486 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 FAM83CQ9BQN1 747 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 MRPL46Q9H2W6 279 aaKnown RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 TRABDQ9H4I3 376 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 EBF3Q9H4W6 596 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 RHBDL2Q9NX52 303 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 RABL2AQ9UBK7 228 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-201ENST00000442201 FBXO10Q9UK96 956 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 CHD5Q8TDI0 1954 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 MYO9BQ13459 2157 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 TMEM265A0A087WTH1 108 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 A0A0J9YVX5 310 aa8.11□□□□□ -1.11
CCDC39-201ENST00000442201 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms