RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 KCNN4O15554 427 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 PMPCBO75439 489 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 RECQL5O94762 991 aaPredicted RBP18.71■□□□□ 0.59
SHH-204ENST00000441114 PRLP01236 227 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 CD68P34810 354 aaPredicted RBP18.71■□□□□ 0.59
SHH-204ENST00000441114 GALNT3Q14435 633 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 CNGA3Q16281 694 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 WSCD2Q2TBF2 565 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 SLC22A18ASQ8N1D0 253 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 TTC13Q8NBP0 860 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 SPOCK2Q92563 424 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 IFT43Q96FT9 208 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 CAMK1GQ96NX5 476 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 FERMT1Q9BQL6 677 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 RSPH14Q9UHP6 348 aa18.71■□□□□ 0.59
SHH-204ENST00000441114 R3HDM2Q9Y2K5 976 aaKnown RBP18.71■□□□□ 0.59
SHH-204ENST00000441114 CEP250Q9BV73 2442 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 A0A0J9YYE9 177 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 CFAP69A5D8W1 941 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 SH3BP5O60239 455 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 DFNA5O60443 496 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 HEXIM1O94992 359 aaKnown RBP18.7■□□□□ 0.58
SHH-204ENST00000441114 TRBC1P01850 177 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 ZNF883P0CG24 379 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 LHCGRP22888 699 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 RABIFP47224 123 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 ARRB1P49407 418 aaPredicted RBP18.7■□□□□ 0.58
SHH-204ENST00000441114 BNIP3Q12983 259 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 SLC14A1Q13336 389 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 PDE1CQ14123 709 aaPredicted RBP18.7■□□□□ 0.58
SHH-204ENST00000441114 ZNF542PQ5EBM4 170 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 CRTC1Q6UUV9 634 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 HSD11B1LQ7Z5J1 315 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 GATAD2AQ86YP4 633 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 REXO1L1PQ8IX06 675 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 KNL1Q8NG31 2342 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 FAM174AQ8TBP5 190 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 VAT1Q99536 393 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 ADGRE3Q9BY15 652 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 CAAP1Q9H8G2 361 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 PPIL1Q9Y3C6 166 aa18.7■□□□□ 0.58
SHH-204ENST00000441114 GIPC1O14908 333 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 ZSCAN12O43309 604 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 SDC3O75056 442 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 STK10O94804 968 aaKnown RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 GM2AP17900 193 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 NOVA1P51513 510 aaKnown RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 THOP1P52888 689 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 PFN3P60673 137 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 KLF1Q13351 362 aaPredicted RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 INPP5AQ14642 412 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 SUZ12Q15022 739 aaKnown RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 SHBQ15464 509 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 QPCTQ16769 361 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 PPM1JQ5JR12 505 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 TPRG1LQ5T0D9 272 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 LRRC66Q68CR7 880 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 PSAPL1Q6NUJ1 521 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 DCP2Q8IU60 420 aaKnown RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 NAXDQ8IW45 347 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 OXR1Q8N573 874 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 PLA2G15Q8NCC3 412 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 UBE2Q2Q8WVN8 375 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 NUS1Q96E22 293 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 COQ10AQ96MF6 247 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 MCCC1Q96RQ3 725 aaPredicted RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 MLPHQ9BV36 600 aaPredicted RBP18.69■□□□□ 0.58
SHH-204ENST00000441114 SLC32A1Q9H598 525 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 ERVMER34-1Q9H9K5 563 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 TRHDEQ9UKU6 1024 aa18.69■□□□□ 0.58
SHH-204ENST00000441114 GOLGA6CA6NDK9 693 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 GOLGA6BA6NDN3 693 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 CAPN8A6NHC0 703 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ANKRD66B4E2M5 251 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 KCNK5O95279 499 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 CLDN7O95471 211 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ITGAVP06756 1048 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 GOLGA6DP0CG33 693 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ETV3P41162 512 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 RPL26P61254 145 aaKnown RBP18.68■□□□□ 0.58
SHH-204ENST00000441114 CDK18Q07002 472 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ANKRD20A2Q5SQ80 823 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ANKRD20A1Q5TYW2 823 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ANKRD20A3Q5VUR7 823 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 CCDC70Q6NSX1 233 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 Q6ZVL8 140 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 SLC13A5Q86YT5 568 aaPredicted RBP18.68■□□□□ 0.58
SHH-204ENST00000441114 CCDC110Q8TBZ0 833 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 RHBDD1Q8TEB9 315 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ATG4AQ8WYN0 398 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 FCRL5Q96RD9 977 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 TLR10Q9BXR5 811 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 DNAJC28Q9NX36 388 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 GOLGA6AQ9NYA3 693 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 FAM153AQ9UHL3 310 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 CD84Q9UIB8 345 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 RPL26L1Q9UNX3 145 aaKnown RBP18.68■□□□□ 0.58
SHH-204ENST00000441114 OR1A2Q9Y585 309 aa18.68■□□□□ 0.58
SHH-204ENST00000441114 ENC1O14682 589 aa18.67■□□□□ 0.58
SHH-204ENST00000441114 PIRTP0C851 137 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms