RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 LRRC14Q15048 493 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 TMEM52BQ4KMG9 183 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 RAD9BQ6WBX8 426 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 USP53Q70EK8 1073 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 CCNJLQ8IV13 435 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 MSANTD4Q8NCY6 345 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 FAM172AQ8WUF8 416 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 PTCD2Q8WV60 388 aaKnown RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 GLMNQ92990 594 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 GRAMD1AQ96CP6 724 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 CCDC97Q96F63 343 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 TBATAQ96M53 351 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 EIF3CQ99613 913 aaKnown RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 APOOQ9BUR5 198 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 OSBPL1AQ9BXW6 950 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 MAGEH1Q9H213 219 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 SEMA6CQ9H3T2 930 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 SUDS3Q9H7L9 328 aaPredicted RBP12.99□□□□□ -0.33
LINC00339-202ENST00000416769 KLQ9UEF7 1012 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 NENFQ9UMX5 172 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 PCDHGA7Q9Y5G6 932 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 RNF215Q9Y6U7 377 aa12.99□□□□□ -0.33
LINC00339-202ENST00000416769 C9orf172C9J069 976 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RASA4BC9J798 803 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 J3KR12 359 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 TERTO14746 1132 aaKnown RBP12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RASA4O43374 803 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RASGRP1O95267 797 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 NDUFA10O95299 355 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 CTSEP14091 401 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 GM2AP17900 193 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 MMP8P22894 467 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 SDC4P31431 198 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RFC1P35251 1148 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-202ENST00000416769 LIG3P49916 1009 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 MAPK10P53779 464 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 CCZ1BP86790 482 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 CCZ1P86791 482 aaPredicted RBP12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RALGDSQ12967 914 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 CLCA4Q14CN2 919 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 C16orf72Q14CZ0 275 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 CAMK1DQ8IU85 385 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 MCOLN2Q8IZK6 566 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 GPR156Q8NFN8 814 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 USP7Q93009 1102 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 SGF29Q96ES7 293 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 LGR4Q9BXB1 951 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 RDH14Q9HBH5 336 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 GPATCH2LQ9NWQ4 482 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 TAS2R14Q9NYV8 317 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 ADAM22Q9P0K1 906 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 PCDHGA4Q9Y5G9 962 aa12.98□□□□□ -0.33
LINC00339-202ENST00000416769 UBR5O95071 2799 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 TTC24A2A3L6 582 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 A8MX80 341 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 TMCO5BA8MYB1 307 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 B4DGG1 531 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 IGSF6O95976 241 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 CALB1P05937 261 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 JMJD7P0C870 316 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 CCL4P13236 92 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 CCKBRP32239 447 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ETFBP38117 255 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 MAGEA1P43355 309 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ARSDP51689 593 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 MAZP56270 477 aaKnown RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ZFP36L1Q07352 338 aaKnown RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ELOCQ15369 112 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 SPA17Q15506 151 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 TBR1Q16650 682 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 SPRED1Q7Z699 444 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ZSCAN30Q86W11 494 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 FSTL5Q8N475 847 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 RTL3Q8N8U3 475 aaKnown RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 CENPIQ92674 756 aaPredicted RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 ARHGEF26Q96DR7 871 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 CELF6Q96J87 481 aaKnown RBP12.97□□□□□ -0.33
LINC00339-202ENST00000416769 TMEM168Q9H0V1 697 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 PDFQ9HBH1 243 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 STARD5Q9NSY2 213 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 SPTLC3Q9NUV7 552 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 DKK3Q9UBP4 350 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 IL17BQ9UHF5 180 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 INTUQ9ULD6 942 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 HPCAL4Q9UM19 191 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 MFHAS1Q9Y4C4 1052 aa12.97□□□□□ -0.33
LINC00339-202ENST00000416769 TSPAN11A1L157 253 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ANKRD62A6NC57 917 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 RIOK3O14730 519 aaKnown RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 CCP110O43303 1012 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 CREB3O43889 395 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 IPO7O95373 1038 aaKnown RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 ALPIP09923 528 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 H2AFZP0C0S5 128 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 MYBL1P10243 752 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 LIPCP11150 499 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 EPHB2P29323 1055 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 MMP12P39900 470 aa12.96□□□□□ -0.33
LINC00339-202ENST00000416769 MLLT3P42568 568 aaPredicted RBP12.96□□□□□ -0.33
LINC00339-202ENST00000416769 PTPN9P43378 593 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms