RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SIGLEC10Q96LC7 697 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 MGME1Q9BQP7 344 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 CHRDQ9H2X0 955 aa13.51□□□□□ -0.25
LIMS1-204ENST00000409441 TECTAO75443 2155 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 MYO18AQ92614 2054 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 ATG2BQ96BY7 2078 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 AVILO75366 819 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 GJB3O75712 270 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 IGSF6O95976 241 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 AOC1P19801 751 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CES1P23141 567 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CD68P34810 354 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CSNK1DP48730 415 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CCNHP51946 323 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SLC18A2Q05940 514 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CAMK2GQ13555 558 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 STARD3Q14849 445 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SEPT7Q16181 437 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CRY1Q16526 586 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 PARP6Q2NL67 630 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 LRRC8BQ6P9F7 803 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 TMEM92Q6UXU6 159 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SYT13Q7L8C5 426 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 STK40Q8N2I9 435 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SPEM1Q8N4L4 309 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 GBP7Q8N8V2 638 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CHST14Q8NCH0 376 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 OR6K2Q8NGY2 324 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 LRRC8CQ8TDW0 803 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 MTBPQ96DY7 904 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 FAM129BQ96TA1 746 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SEMA3CQ99985 751 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 PAIP2Q9BPZ3 127 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 POLR1EQ9GZS1 481 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 NOD2Q9HC29 1040 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 GLOD4Q9HC38 313 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 DLGAP2Q9P1A6 1054 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 EVLQ9UI08 416 aaPredicted RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CAPN7Q9Y6W3 813 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 INSIG1O15503 277 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 KRT37O76014 449 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SLC34A2O95436 690 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SNRPAP09012 282 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 CR2P20023 1033 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 COL9A1P20849 921 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 GKP32189 559 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 DSC2Q02487 901 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 RAD51Q06609 339 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 NIPAL4Q0D2K0 466 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 MTAPQ13126 283 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 ELAVL3Q14576 367 aaKnown RBP13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SLC1A5Q15758 541 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 STEAP4Q687X5 459 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 LVRNQ6Q4G3 990 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 ARRDC2Q8TBH0 407 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 OR8D1Q8WZ84 308 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 APOPT1Q96IL0 206 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 NUDCD1Q96RS6 583 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 HEPHQ9BQS7 1158 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 NAT9Q9BTE0 207 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 PITPNM3Q9BZ71 974 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SLC25A51Q9H1U9 297 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SCUBE2Q9NQ36 999 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 C2orf42Q9NWW7 574 aa13.5□□□□□ -0.25
LIMS1-204ENST00000409441 SHROOM3Q8TF72 1996 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 FAM159BA6NKW6 160 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 DNAJC8O75937 253 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-204ENST00000409441 NFKB1P19838 968 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 SCTRP47872 440 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 SERPINB9P50453 376 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 DGKEP52429 567 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 MTM1Q13496 603 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 NAB1Q13506 487 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 ZKSCAN8Q15776 578 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-204ENST00000409441 TTC31Q49AM3 519 aaPredicted RBP13.49□□□□□ -0.25
LIMS1-204ENST00000409441 ARSIQ5FYB1 569 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 SYCP2LQ5T4T6 812 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 ALG1LQ6GMV1 187 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 ITPRIPL1Q6GPH6 555 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 NCEH1Q6PIU2 408 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 UNC5AQ6ZN44 842 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 BMP8AQ7Z5Y6 402 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 OR2T3Q8NH03 318 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 STAMBPL1Q96FJ0 436 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 IMP4Q96G21 291 aaKnown RBP13.49□□□□□ -0.25
LIMS1-204ENST00000409441 NSMCE3Q96MG7 304 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 CPEB1Q9BZB8 566 aaKnown RBP13.49□□□□□ -0.25
LIMS1-204ENST00000409441 VPS11Q9H270 941 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 ZDHHC6Q9H6R6 413 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 PLAC1Q9HBJ0 212 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 CD248Q9HCU0 757 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 MKS1Q9NXB0 559 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 IL36AQ9UHA7 158 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 PPM1HQ9ULR3 514 aa13.49□□□□□ -0.25
LIMS1-204ENST00000409441 SDR42E2A6NKP2 422 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 F5H423 210 aaPredicted RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 H0YHG0 523 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 EDF1O60869 148 aaKnown RBP13.48□□□□□ -0.25
LIMS1-204ENST00000409441 KRT38O76015 456 aa13.48□□□□□ -0.25
LIMS1-204ENST00000409441 CTSLP07711 333 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms